Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22055

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS22045 and AZOBR_RS22050 are separated by 54 nucleotidesAZOBR_RS22050 and AZOBR_RS22055 are separated by 99 nucleotidesAZOBR_RS22055 and AZOBR_RS22060 overlap by 4 nucleotidesAZOBR_RS22060 and AZOBR_RS22065 overlap by 4 nucleotides AZOBR_RS22045: AZOBR_RS22045 - GTP pyrophosphokinase, at 1,714,241 to 1,716,412 _RS22045 AZOBR_RS22050: AZOBR_RS22050 - histidine triad (HIT) protein, at 1,716,467 to 1,716,889 _RS22050 AZOBR_RS22055: AZOBR_RS22055 - pyridoxine 5'-phosphate synthase, at 1,716,989 to 1,717,741 _RS22055 AZOBR_RS22060: AZOBR_RS22060 - 4'-phosphopantetheinyl transferase, at 1,717,738 to 1,718,205 _RS22060 AZOBR_RS22065: AZOBR_RS22065 - signal peptidase, at 1,718,202 to 1,718,972 _RS22065 Position (kb) 1716 1717 1718Strain fitness (log2 ratio) -2 -1 0 1at 1716.003 kb on - strand, within AZOBR_RS22045at 1716.785 kb on + strand, within AZOBR_RS22050at 1716.921 kb on + strandat 1716.921 kb on + strandat 1716.921 kb on + strandat 1716.921 kb on + strandat 1716.921 kb on + strandat 1716.921 kb on + strandat 1716.988 kb on + strandat 1717.580 kb on + strand, within AZOBR_RS22055

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,716,003 - AZOBR_RS22045 0.81 +0.8
1,716,785 + AZOBR_RS22050 0.75 -2.2
1,716,921 + -0.2
1,716,921 + +0.2
1,716,921 + -0.3
1,716,921 + -0.6
1,716,921 + +0.2
1,716,921 + +0.7
1,716,988 + -2.0
1,717,580 + AZOBR_RS22055 0.78 -1.6

Or see this region's nucleotide sequence