Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18215 and AZOBR_RS18220 are separated by 196 nucleotides AZOBR_RS18220 and AZOBR_RS18225 are separated by 14 nucleotides AZOBR_RS18225 and AZOBR_RS18230 are separated by 291 nucleotides
AZOBR_RS18215: AZOBR_RS18215 - hypothetical protein, at 849,753 to 851,039
_RS18215
AZOBR_RS18220: AZOBR_RS18220 - conserved membrane protein of unknown function, at 851,236 to 854,322
_RS18220
AZOBR_RS18225: AZOBR_RS18225 - hypothetical protein, at 854,337 to 854,720
_RS18225
AZOBR_RS18230: AZOBR_RS18230 - hypothetical protein, at 855,012 to 857,963
_RS18230
Position (kb) 851
852
853
854
855 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 850.488 kb on + strand, within AZOBR_RS18215 at 850.737 kb on + strand, within AZOBR_RS18215 at 850.737 kb on + strand, within AZOBR_RS18215 at 850.737 kb on + strand, within AZOBR_RS18215 at 850.863 kb on + strand, within AZOBR_RS18215 at 850.863 kb on + strand, within AZOBR_RS18215 at 850.866 kb on + strand, within AZOBR_RS18215 at 850.866 kb on + strand, within AZOBR_RS18215 at 850.866 kb on + strand, within AZOBR_RS18215 at 850.866 kb on + strand, within AZOBR_RS18215 at 850.866 kb on + strand, within AZOBR_RS18215 at 850.867 kb on - strand, within AZOBR_RS18215 at 850.867 kb on - strand, within AZOBR_RS18215 at 850.867 kb on - strand, within AZOBR_RS18215 at 850.867 kb on - strand, within AZOBR_RS18215 at 850.906 kb on - strand, within AZOBR_RS18215 at 850.920 kb on + strand at 850.920 kb on + strand at 850.921 kb on - strand at 850.986 kb on + strand at 850.986 kb on + strand at 850.986 kb on + strand at 850.986 kb on + strand at 850.986 kb on + strand at 850.986 kb on + strand at 850.987 kb on - strand at 850.987 kb on - strand at 850.987 kb on - strand at 851.060 kb on - strand at 851.060 kb on - strand at 851.183 kb on + strand at 851.183 kb on + strand at 851.183 kb on + strand at 851.183 kb on + strand at 851.183 kb on + strand at 851.183 kb on + strand at 851.183 kb on + strand at 851.183 kb on + strand at 851.657 kb on - strand, within AZOBR_RS18220 at 851.782 kb on + strand, within AZOBR_RS18220 at 851.782 kb on + strand, within AZOBR_RS18220 at 851.782 kb on + strand, within AZOBR_RS18220 at 851.782 kb on + strand, within AZOBR_RS18220 at 851.783 kb on - strand, within AZOBR_RS18220 at 852.238 kb on + strand, within AZOBR_RS18220 at 852.238 kb on + strand, within AZOBR_RS18220 at 852.238 kb on + strand, within AZOBR_RS18220 at 852.239 kb on - strand, within AZOBR_RS18220 at 852.475 kb on + strand, within AZOBR_RS18220 at 852.577 kb on + strand, within AZOBR_RS18220 at 852.598 kb on + strand, within AZOBR_RS18220 at 852.598 kb on + strand, within AZOBR_RS18220 at 852.599 kb on - strand, within AZOBR_RS18220 at 852.599 kb on - strand, within AZOBR_RS18220 at 852.599 kb on - strand, within AZOBR_RS18220 at 852.617 kb on - strand, within AZOBR_RS18220 at 852.617 kb on - strand, within AZOBR_RS18220 at 852.617 kb on - strand, within AZOBR_RS18220 at 852.803 kb on - strand, within AZOBR_RS18220 at 852.803 kb on - strand, within AZOBR_RS18220 at 852.803 kb on - strand, within AZOBR_RS18220 at 852.862 kb on + strand, within AZOBR_RS18220 at 853.195 kb on + strand, within AZOBR_RS18220 at 853.195 kb on + strand, within AZOBR_RS18220 at 853.196 kb on - strand, within AZOBR_RS18220 at 853.306 kb on + strand, within AZOBR_RS18220 at 853.307 kb on - strand, within AZOBR_RS18220 at 853.307 kb on - strand, within AZOBR_RS18220 at 853.307 kb on - strand, within AZOBR_RS18220 at 853.984 kb on + strand, within AZOBR_RS18220 at 853.984 kb on + strand, within AZOBR_RS18220 at 853.987 kb on + strand, within AZOBR_RS18220 at 853.987 kb on + strand, within AZOBR_RS18220 at 853.988 kb on - strand, within AZOBR_RS18220 at 853.988 kb on - strand, within AZOBR_RS18220 at 853.988 kb on - strand, within AZOBR_RS18220 at 854.140 kb on + strand at 854.167 kb on + strand at 854.496 kb on + strand, within AZOBR_RS18225 at 854.782 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 850,488 + AZOBR_RS18215 0.57 -0.4 850,737 + AZOBR_RS18215 0.76 +0.5 850,737 + AZOBR_RS18215 0.76 -0.4 850,737 + AZOBR_RS18215 0.76 +0.0 850,863 + AZOBR_RS18215 0.86 +1.0 850,863 + AZOBR_RS18215 0.86 -0.0 850,866 + AZOBR_RS18215 0.86 -0.1 850,866 + AZOBR_RS18215 0.86 +0.4 850,866 + AZOBR_RS18215 0.86 -0.5 850,866 + AZOBR_RS18215 0.86 -0.7 850,866 + AZOBR_RS18215 0.86 +1.0 850,867 - AZOBR_RS18215 0.87 +0.7 850,867 - AZOBR_RS18215 0.87 +0.5 850,867 - AZOBR_RS18215 0.87 +0.3 850,867 - AZOBR_RS18215 0.87 +0.6 850,906 - AZOBR_RS18215 0.90 -0.2 850,920 + -2.3 850,920 + +0.1 850,921 - +0.4 850,986 + -1.3 850,986 + +0.0 850,986 + +0.2 850,986 + -0.8 850,986 + +1.7 850,986 + -1.8 850,987 - -0.8 850,987 - -0.3 850,987 - -0.2 851,060 - +3.7 851,060 - -0.8 851,183 + +0.5 851,183 + +0.8 851,183 + -2.5 851,183 + +2.9 851,183 + -2.7 851,183 + -0.7 851,183 + +0.2 851,183 + +1.4 851,657 - AZOBR_RS18220 0.14 +0.9 851,782 + AZOBR_RS18220 0.18 -1.2 851,782 + AZOBR_RS18220 0.18 +0.2 851,782 + AZOBR_RS18220 0.18 +1.4 851,782 + AZOBR_RS18220 0.18 +0.2 851,783 - AZOBR_RS18220 0.18 +1.2 852,238 + AZOBR_RS18220 0.32 -0.2 852,238 + AZOBR_RS18220 0.32 +0.4 852,238 + AZOBR_RS18220 0.32 -1.5 852,239 - AZOBR_RS18220 0.32 -0.9 852,475 + AZOBR_RS18220 0.40 +0.5 852,577 + AZOBR_RS18220 0.43 +0.3 852,598 + AZOBR_RS18220 0.44 +0.2 852,598 + AZOBR_RS18220 0.44 +0.2 852,599 - AZOBR_RS18220 0.44 +0.9 852,599 - AZOBR_RS18220 0.44 -2.4 852,599 - AZOBR_RS18220 0.44 +3.3 852,617 - AZOBR_RS18220 0.45 +1.1 852,617 - AZOBR_RS18220 0.45 +1.2 852,617 - AZOBR_RS18220 0.45 +1.5 852,803 - AZOBR_RS18220 0.51 -2.4 852,803 - AZOBR_RS18220 0.51 +0.9 852,803 - AZOBR_RS18220 0.51 +0.8 852,862 + AZOBR_RS18220 0.53 -0.1 853,195 + AZOBR_RS18220 0.63 -1.9 853,195 + AZOBR_RS18220 0.63 +1.4 853,196 - AZOBR_RS18220 0.63 -2.4 853,306 + AZOBR_RS18220 0.67 -0.7 853,307 - AZOBR_RS18220 0.67 +0.4 853,307 - AZOBR_RS18220 0.67 +2.4 853,307 - AZOBR_RS18220 0.67 +0.5 853,984 + AZOBR_RS18220 0.89 -0.3 853,984 + AZOBR_RS18220 0.89 +0.4 853,987 + AZOBR_RS18220 0.89 -1.1 853,987 + AZOBR_RS18220 0.89 +0.7 853,988 - AZOBR_RS18220 0.89 +0.2 853,988 - AZOBR_RS18220 0.89 -2.8 853,988 - AZOBR_RS18220 0.89 +0.2 854,140 + +0.0 854,167 + +0.3 854,496 + AZOBR_RS18225 0.41 +0.1 854,782 + -1.7
Or see this region's nucleotide sequence