Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18175 and AZOBR_RS18180 are separated by 4 nucleotides AZOBR_RS18180 and AZOBR_RS18185 are separated by 60 nucleotides AZOBR_RS18185 and AZOBR_RS18190 are separated by 400 nucleotides
AZOBR_RS18175: AZOBR_RS18175 - sugar ABC transporter, at 836,263 to 837,150
_RS18175
AZOBR_RS18180: AZOBR_RS18180 - sugar ABC transporter, at 837,155 to 837,976
_RS18180
AZOBR_RS18185: AZOBR_RS18185 - sugar ABC transporter, at 838,037 to 839,191
_RS18185
AZOBR_RS18190: AZOBR_RS18190 - hypothetical protein, at 839,592 to 840,293
_RS18190
Position (kb) 838
839
840 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 837.103 kb on + strand at 837.104 kb on - strand at 837.225 kb on - strand at 837.773 kb on + strand, within AZOBR_RS18180 at 837.773 kb on + strand, within AZOBR_RS18180 at 837.773 kb on + strand, within AZOBR_RS18180 at 837.773 kb on + strand, within AZOBR_RS18180 at 837.774 kb on - strand, within AZOBR_RS18180 at 837.774 kb on - strand, within AZOBR_RS18180 at 837.774 kb on - strand, within AZOBR_RS18180 at 837.893 kb on + strand, within AZOBR_RS18180 at 837.917 kb on + strand at 837.935 kb on + strand at 837.935 kb on + strand at 837.936 kb on - strand at 837.936 kb on - strand at 838.022 kb on - strand at 838.042 kb on + strand at 838.283 kb on + strand, within AZOBR_RS18185 at 838.284 kb on - strand, within AZOBR_RS18185 at 838.382 kb on + strand, within AZOBR_RS18185 at 838.383 kb on - strand, within AZOBR_RS18185 at 838.652 kb on + strand, within AZOBR_RS18185 at 838.652 kb on + strand, within AZOBR_RS18185 at 838.652 kb on + strand, within AZOBR_RS18185 at 838.653 kb on - strand, within AZOBR_RS18185 at 838.730 kb on + strand, within AZOBR_RS18185 at 838.730 kb on + strand, within AZOBR_RS18185 at 838.751 kb on + strand, within AZOBR_RS18185 at 838.752 kb on - strand, within AZOBR_RS18185 at 838.772 kb on + strand, within AZOBR_RS18185 at 838.772 kb on + strand, within AZOBR_RS18185 at 838.773 kb on - strand, within AZOBR_RS18185 at 838.773 kb on - strand, within AZOBR_RS18185 at 839.082 kb on + strand at 839.082 kb on + strand at 839.082 kb on + strand at 839.083 kb on - strand at 839.267 kb on + strand at 839.267 kb on + strand at 839.268 kb on - strand at 839.381 kb on - strand at 839.427 kb on + strand at 839.591 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 837,103 + -2.7 837,104 - +0.2 837,225 - +2.4 837,773 + AZOBR_RS18180 0.75 +0.2 837,773 + AZOBR_RS18180 0.75 +0.3 837,773 + AZOBR_RS18180 0.75 +0.7 837,773 + AZOBR_RS18180 0.75 +1.0 837,774 - AZOBR_RS18180 0.75 -1.6 837,774 - AZOBR_RS18180 0.75 +0.7 837,774 - AZOBR_RS18180 0.75 -0.2 837,893 + AZOBR_RS18180 0.90 +0.4 837,917 + -0.7 837,935 + +1.5 837,935 + -2.8 837,936 - -1.4 837,936 - +3.6 838,022 - +0.7 838,042 + -0.0 838,283 + AZOBR_RS18185 0.21 +0.6 838,284 - AZOBR_RS18185 0.21 +0.6 838,382 + AZOBR_RS18185 0.30 -1.2 838,383 - AZOBR_RS18185 0.30 -0.9 838,652 + AZOBR_RS18185 0.53 +0.3 838,652 + AZOBR_RS18185 0.53 -2.3 838,652 + AZOBR_RS18185 0.53 +0.2 838,653 - AZOBR_RS18185 0.53 -1.3 838,730 + AZOBR_RS18185 0.60 -0.1 838,730 + AZOBR_RS18185 0.60 +1.4 838,751 + AZOBR_RS18185 0.62 -0.9 838,752 - AZOBR_RS18185 0.62 +1.7 838,772 + AZOBR_RS18185 0.64 -1.1 838,772 + AZOBR_RS18185 0.64 +2.4 838,773 - AZOBR_RS18185 0.64 -0.7 838,773 - AZOBR_RS18185 0.64 -0.8 839,082 + -2.1 839,082 + +0.7 839,082 + +0.6 839,083 - +1.4 839,267 + -1.1 839,267 + -0.9 839,268 - -0.1 839,381 - -0.4 839,427 + -0.8 839,591 + -0.4
Or see this region's nucleotide sequence