Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06565

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS06560 and AZOBR_RS06565 are separated by 50 nucleotidesAZOBR_RS06565 and AZOBR_RS06570 are separated by 175 nucleotides AZOBR_RS06560: AZOBR_RS06560 - acetolactate synthase, at 1,389,133 to 1,390,896 _RS06560 AZOBR_RS06565: AZOBR_RS06565 - acetolactate synthase, at 1,390,947 to 1,391,453 _RS06565 AZOBR_RS06570: AZOBR_RS06570 - ketol-acid reductoisomerase, at 1,391,629 to 1,392,648 _RS06570 Position (kb) 1390 1391 1392Strain fitness (log2 ratio) -3 -2 -1 0 1at 1390.310 kb on - strand, within AZOBR_RS06560at 1390.531 kb on + strand, within AZOBR_RS06560at 1390.570 kb on + strand, within AZOBR_RS06560at 1390.571 kb on - strand, within AZOBR_RS06560at 1390.571 kb on - strand, within AZOBR_RS06560at 1390.939 kb on + strandat 1390.940 kb on - strandat 1390.940 kb on - strandat 1391.044 kb on - strand, within AZOBR_RS06565at 1391.475 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,390,310 - AZOBR_RS06560 0.67 +1.3
1,390,531 + AZOBR_RS06560 0.79 +1.3
1,390,570 + AZOBR_RS06560 0.81 +0.7
1,390,571 - AZOBR_RS06560 0.82 +0.0
1,390,571 - AZOBR_RS06560 0.82 +1.3
1,390,939 + +0.7
1,390,940 - +1.4
1,390,940 - -0.1
1,391,044 - AZOBR_RS06565 0.19 -3.3
1,391,475 + -0.1

Or see this region's nucleotide sequence