Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05055

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS05045 and AZOBR_RS05050 are separated by 121 nucleotidesAZOBR_RS05050 and AZOBR_RS05055 are separated by 119 nucleotidesAZOBR_RS05055 and AZOBR_RS05060 are separated by 1 nucleotides AZOBR_RS05045: AZOBR_RS05045 - glucose-6-phosphate isomerase, at 1,069,429 to 1,071,072 _RS05045 AZOBR_RS05050: AZOBR_RS05050 - hypothetical protein, at 1,071,194 to 1,071,415 _RS05050 AZOBR_RS05055: AZOBR_RS05055 - zinc protease, at 1,071,535 to 1,072,899 _RS05055 AZOBR_RS05060: AZOBR_RS05060 - zinc protease, at 1,072,901 to 1,074,223 _RS05060 Position (kb) 1071 1072 1073Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1070.658 kb on - strand, within AZOBR_RS05045at 1071.107 kb on + strandat 1071.107 kb on + strandat 1071.169 kb on + strandat 1071.170 kb on - strandat 1071.170 kb on - strandat 1071.183 kb on + strandat 1071.184 kb on - strandat 1071.408 kb on + strandat 1071.409 kb on - strandat 1071.424 kb on - strandat 1071.782 kb on + strand, within AZOBR_RS05055at 1071.782 kb on + strand, within AZOBR_RS05055at 1071.783 kb on - strand, within AZOBR_RS05055at 1071.783 kb on - strand, within AZOBR_RS05055at 1071.935 kb on + strand, within AZOBR_RS05055at 1071.935 kb on + strand, within AZOBR_RS05055at 1071.936 kb on - strand, within AZOBR_RS05055at 1071.936 kb on - strand, within AZOBR_RS05055at 1071.941 kb on + strand, within AZOBR_RS05055at 1071.942 kb on - strand, within AZOBR_RS05055at 1071.951 kb on - strand, within AZOBR_RS05055at 1072.019 kb on + strand, within AZOBR_RS05055at 1072.019 kb on + strand, within AZOBR_RS05055at 1072.019 kb on + strand, within AZOBR_RS05055at 1072.020 kb on - strand, within AZOBR_RS05055at 1072.349 kb on + strand, within AZOBR_RS05055at 1072.376 kb on + strand, within AZOBR_RS05055at 1072.397 kb on + strand, within AZOBR_RS05055at 1072.397 kb on + strand, within AZOBR_RS05055at 1072.398 kb on - strand, within AZOBR_RS05055at 1072.574 kb on + strand, within AZOBR_RS05055at 1072.628 kb on + strand, within AZOBR_RS05055at 1073.103 kb on + strand, within AZOBR_RS05060at 1073.332 kb on - strand, within AZOBR_RS05060at 1073.373 kb on - strand, within AZOBR_RS05060at 1073.392 kb on - strand, within AZOBR_RS05060at 1073.413 kb on - strand, within AZOBR_RS05060at 1073.551 kb on - strand, within AZOBR_RS05060at 1073.553 kb on + strand, within AZOBR_RS05060at 1073.553 kb on + strand, within AZOBR_RS05060at 1073.553 kb on + strand, within AZOBR_RS05060at 1073.628 kb on + strand, within AZOBR_RS05060at 1073.628 kb on + strand, within AZOBR_RS05060at 1073.629 kb on - strand, within AZOBR_RS05060at 1073.640 kb on + strand, within AZOBR_RS05060at 1073.641 kb on - strand, within AZOBR_RS05060at 1073.724 kb on + strand, within AZOBR_RS05060at 1073.724 kb on + strand, within AZOBR_RS05060at 1073.725 kb on - strand, within AZOBR_RS05060at 1073.725 kb on - strand, within AZOBR_RS05060

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,070,658 - AZOBR_RS05045 0.75 -1.6
1,071,107 + +1.4
1,071,107 + +0.2
1,071,169 + -1.1
1,071,170 - +0.1
1,071,170 - -1.8
1,071,183 + -0.6
1,071,184 - -1.0
1,071,408 + +0.4
1,071,409 - -0.4
1,071,424 - +1.0
1,071,782 + AZOBR_RS05055 0.18 -2.0
1,071,782 + AZOBR_RS05055 0.18 +0.6
1,071,783 - AZOBR_RS05055 0.18 +0.8
1,071,783 - AZOBR_RS05055 0.18 -0.1
1,071,935 + AZOBR_RS05055 0.29 +3.0
1,071,935 + AZOBR_RS05055 0.29 +0.8
1,071,936 - AZOBR_RS05055 0.29 -0.3
1,071,936 - AZOBR_RS05055 0.29 +1.1
1,071,941 + AZOBR_RS05055 0.30 -0.8
1,071,942 - AZOBR_RS05055 0.30 -0.9
1,071,951 - AZOBR_RS05055 0.30 -0.9
1,072,019 + AZOBR_RS05055 0.35 -1.8
1,072,019 + AZOBR_RS05055 0.35 -0.4
1,072,019 + AZOBR_RS05055 0.35 +2.4
1,072,020 - AZOBR_RS05055 0.36 -0.4
1,072,349 + AZOBR_RS05055 0.60 +0.5
1,072,376 + AZOBR_RS05055 0.62 +0.8
1,072,397 + AZOBR_RS05055 0.63 +0.2
1,072,397 + AZOBR_RS05055 0.63 -0.9
1,072,398 - AZOBR_RS05055 0.63 -0.8
1,072,574 + AZOBR_RS05055 0.76 -0.7
1,072,628 + AZOBR_RS05055 0.80 +0.4
1,073,103 + AZOBR_RS05060 0.15 -2.0
1,073,332 - AZOBR_RS05060 0.33 +0.3
1,073,373 - AZOBR_RS05060 0.36 -1.0
1,073,392 - AZOBR_RS05060 0.37 +0.2
1,073,413 - AZOBR_RS05060 0.39 -0.5
1,073,551 - AZOBR_RS05060 0.49 -0.4
1,073,553 + AZOBR_RS05060 0.49 -0.4
1,073,553 + AZOBR_RS05060 0.49 -0.6
1,073,553 + AZOBR_RS05060 0.49 -0.7
1,073,628 + AZOBR_RS05060 0.55 -1.6
1,073,628 + AZOBR_RS05060 0.55 -2.2
1,073,629 - AZOBR_RS05060 0.55 +0.8
1,073,640 + AZOBR_RS05060 0.56 +0.8
1,073,641 - AZOBR_RS05060 0.56 +0.2
1,073,724 + AZOBR_RS05060 0.62 -2.8
1,073,724 + AZOBR_RS05060 0.62 +0.0
1,073,725 - AZOBR_RS05060 0.62 +0.2
1,073,725 - AZOBR_RS05060 0.62 +2.4

Or see this region's nucleotide sequence