Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS04590

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS04585 and AZOBR_RS04590 are separated by 905 nucleotidesAZOBR_RS04590 and AZOBR_RS04595 are separated by 104 nucleotidesAZOBR_RS04595 and AZOBR_RS04600 are separated by 12 nucleotides AZOBR_RS04585: AZOBR_RS04585 - exported protein of unknown function, at 961,848 to 962,249 _RS04585 AZOBR_RS04590: AZOBR_RS04590 - 3-hydroxyalkanoate synthetase, at 963,155 to 965,473 _RS04590 AZOBR_RS04595: AZOBR_RS04595 - hypothetical protein, at 965,578 to 965,997 _RS04595 AZOBR_RS04600: AZOBR_RS04600 - phosphate acetyltransferase, at 966,010 to 966,969 _RS04600 Position (kb) 963 964 965 966Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 962.427 kb on - strandat 962.427 kb on - strandat 962.458 kb on + strandat 962.475 kb on + strandat 962.475 kb on + strandat 962.939 kb on + strandat 962.940 kb on - strandat 963.236 kb on + strandat 963.237 kb on - strandat 963.361 kb on + strandat 963.395 kb on + strand, within AZOBR_RS04590at 963.396 kb on - strand, within AZOBR_RS04590at 963.554 kb on + strand, within AZOBR_RS04590at 963.554 kb on + strand, within AZOBR_RS04590at 963.554 kb on + strand, within AZOBR_RS04590at 963.554 kb on + strand, within AZOBR_RS04590at 963.554 kb on + strand, within AZOBR_RS04590at 963.554 kb on + strand, within AZOBR_RS04590at 963.555 kb on - strand, within AZOBR_RS04590at 963.555 kb on - strand, within AZOBR_RS04590at 963.555 kb on - strand, within AZOBR_RS04590at 963.555 kb on - strand, within AZOBR_RS04590at 963.555 kb on - strand, within AZOBR_RS04590at 963.555 kb on - strand, within AZOBR_RS04590at 963.555 kb on - strand, within AZOBR_RS04590at 963.932 kb on + strand, within AZOBR_RS04590at 963.933 kb on - strand, within AZOBR_RS04590at 963.933 kb on - strand, within AZOBR_RS04590at 963.945 kb on + strand, within AZOBR_RS04590at 963.947 kb on + strand, within AZOBR_RS04590at 964.214 kb on + strand, within AZOBR_RS04590at 964.214 kb on + strand, within AZOBR_RS04590at 964.214 kb on + strand, within AZOBR_RS04590at 964.214 kb on + strand, within AZOBR_RS04590at 964.215 kb on - strand, within AZOBR_RS04590at 964.215 kb on - strand, within AZOBR_RS04590at 964.259 kb on + strand, within AZOBR_RS04590at 964.259 kb on + strand, within AZOBR_RS04590at 964.260 kb on - strand, within AZOBR_RS04590at 964.379 kb on + strand, within AZOBR_RS04590at 964.442 kb on + strand, within AZOBR_RS04590at 964.443 kb on - strand, within AZOBR_RS04590at 964.443 kb on - strand, within AZOBR_RS04590at 964.443 kb on - strand, within AZOBR_RS04590at 964.443 kb on - strand, within AZOBR_RS04590at 964.562 kb on + strand, within AZOBR_RS04590at 964.563 kb on - strand, within AZOBR_RS04590at 964.563 kb on - strand, within AZOBR_RS04590at 964.652 kb on + strandat 964.653 kb on - strand, within AZOBR_RS04590at 964.653 kb on - strand, within AZOBR_RS04590at 964.655 kb on + strand, within AZOBR_RS04590at 964.655 kb on + strand, within AZOBR_RS04590at 964.655 kb on + strand, within AZOBR_RS04590at 964.656 kb on - strand, within AZOBR_RS04590at 964.656 kb on - strand, within AZOBR_RS04590at 964.853 kb on + strand, within AZOBR_RS04590at 964.854 kb on - strand, within AZOBR_RS04590at 964.854 kb on - strand, within AZOBR_RS04590at 964.854 kb on - strand, within AZOBR_RS04590at 965.807 kb on - strand, within AZOBR_RS04595at 965.872 kb on + strand, within AZOBR_RS04595at 965.887 kb on + strand, within AZOBR_RS04595at 965.923 kb on + strand, within AZOBR_RS04595at 965.923 kb on + strand, within AZOBR_RS04595at 965.923 kb on + strand, within AZOBR_RS04595at 965.923 kb on + strand, within AZOBR_RS04595at 965.950 kb on + strand, within AZOBR_RS04595at 965.951 kb on - strand, within AZOBR_RS04595at 965.983 kb on + strandat 965.984 kb on - strandat 965.984 kb on - strandat 965.984 kb on - strandat 966.052 kb on + strandat 966.053 kb on - strandat 966.053 kb on - strandat 966.437 kb on - strand, within AZOBR_RS04600

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
remove
962,427 - +1.4
962,427 - +0.3
962,458 + -0.1
962,475 + +1.0
962,475 + +0.1
962,939 + +0.4
962,940 - -2.5
963,236 + -0.3
963,237 - -0.4
963,361 + -0.2
963,395 + AZOBR_RS04590 0.10 -0.7
963,396 - AZOBR_RS04590 0.10 +0.8
963,554 + AZOBR_RS04590 0.17 -1.3
963,554 + AZOBR_RS04590 0.17 -0.1
963,554 + AZOBR_RS04590 0.17 -0.7
963,554 + AZOBR_RS04590 0.17 -1.7
963,554 + AZOBR_RS04590 0.17 -2.0
963,554 + AZOBR_RS04590 0.17 -0.7
963,555 - AZOBR_RS04590 0.17 +0.8
963,555 - AZOBR_RS04590 0.17 +0.2
963,555 - AZOBR_RS04590 0.17 -0.2
963,555 - AZOBR_RS04590 0.17 -0.0
963,555 - AZOBR_RS04590 0.17 -1.5
963,555 - AZOBR_RS04590 0.17 -0.1
963,555 - AZOBR_RS04590 0.17 +2.4
963,932 + AZOBR_RS04590 0.34 -0.5
963,933 - AZOBR_RS04590 0.34 -0.3
963,933 - AZOBR_RS04590 0.34 -1.1
963,945 + AZOBR_RS04590 0.34 +0.2
963,947 + AZOBR_RS04590 0.34 -0.2
964,214 + AZOBR_RS04590 0.46 +0.8
964,214 + AZOBR_RS04590 0.46 -0.5
964,214 + AZOBR_RS04590 0.46 -0.5
964,214 + AZOBR_RS04590 0.46 +0.8
964,215 - AZOBR_RS04590 0.46 +0.7
964,215 - AZOBR_RS04590 0.46 -2.8
964,259 + AZOBR_RS04590 0.48 +0.2
964,259 + AZOBR_RS04590 0.48 -1.0
964,260 - AZOBR_RS04590 0.48 -0.8
964,379 + AZOBR_RS04590 0.53 -0.3
964,442 + AZOBR_RS04590 0.55 -0.8
964,443 - AZOBR_RS04590 0.56 -0.1
964,443 - AZOBR_RS04590 0.56 +1.2
964,443 - AZOBR_RS04590 0.56 +0.3
964,443 - AZOBR_RS04590 0.56 -1.3
964,562 + AZOBR_RS04590 0.61 -1.2
964,563 - AZOBR_RS04590 0.61 +0.2
964,563 - AZOBR_RS04590 0.61 -0.8
964,652 + +2.4
964,653 - AZOBR_RS04590 0.65 -0.3
964,653 - AZOBR_RS04590 0.65 +0.4
964,655 + AZOBR_RS04590 0.65 +0.3
964,655 + AZOBR_RS04590 0.65 +0.8
964,655 + AZOBR_RS04590 0.65 -0.9
964,656 - AZOBR_RS04590 0.65 -0.6
964,656 - AZOBR_RS04590 0.65 +0.3
964,853 + AZOBR_RS04590 0.73 -0.6
964,854 - AZOBR_RS04590 0.73 -0.5
964,854 - AZOBR_RS04590 0.73 +0.7
964,854 - AZOBR_RS04590 0.73 -0.0
965,807 - AZOBR_RS04595 0.55 +2.2
965,872 + AZOBR_RS04595 0.70 +2.4
965,887 + AZOBR_RS04595 0.74 +0.4
965,923 + AZOBR_RS04595 0.82 +0.4
965,923 + AZOBR_RS04595 0.82 -1.9
965,923 + AZOBR_RS04595 0.82 +0.2
965,923 + AZOBR_RS04595 0.82 -0.8
965,950 + AZOBR_RS04595 0.89 -0.6
965,951 - AZOBR_RS04595 0.89 -0.6
965,983 + +1.6
965,984 - -0.7
965,984 - -2.0
965,984 - +2.4
966,052 + +2.5
966,053 - -0.4
966,053 - -0.7
966,437 - AZOBR_RS04600 0.44 +0.6

Or see this region's nucleotide sequence