Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03200 and AZOBR_RS03205 are separated by 242 nucleotides AZOBR_RS03205 and AZOBR_RS03210 are separated by 283 nucleotides AZOBR_RS03210 and AZOBR_RS03215 are separated by 136 nucleotides AZOBR_RS03215 and AZOBR_RS03220 are separated by 113 nucleotides
AZOBR_RS03200: AZOBR_RS03200 - BolA family transcriptional regulator, at 681,001 to 681,273
_RS03200
AZOBR_RS03205: AZOBR_RS03205 - hypothetical protein, at 681,516 to 681,857
_RS03205
AZOBR_RS03210: AZOBR_RS03210 - hypothetical protein, at 682,141 to 682,755
_RS03210
AZOBR_RS03215: AZOBR_RS03215 - hypothetical protein, at 682,892 to 683,377
_RS03215
AZOBR_RS03220: AZOBR_RS03220 - 3-dehydroquinate synthase, at 683,491 to 684,627
_RS03220
Position (kb) 682
683 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 681.193 kb on + strand, within AZOBR_RS03200 at 681.194 kb on - strand, within AZOBR_RS03200 at 681.342 kb on + strand at 681.343 kb on - strand at 681.346 kb on + strand at 681.346 kb on + strand at 681.426 kb on + strand at 681.515 kb on + strand at 681.545 kb on - strand at 682.050 kb on + strand at 682.063 kb on + strand at 682.063 kb on + strand at 682.063 kb on + strand at 682.063 kb on + strand at 682.064 kb on - strand at 682.064 kb on - strand at 682.064 kb on - strand at 682.079 kb on - strand at 682.175 kb on + strand at 682.340 kb on + strand, within AZOBR_RS03210 at 682.341 kb on - strand, within AZOBR_RS03210 at 682.634 kb on + strand, within AZOBR_RS03210 at 682.634 kb on + strand, within AZOBR_RS03210 at 682.634 kb on + strand, within AZOBR_RS03210 at 682.634 kb on + strand, within AZOBR_RS03210 at 682.635 kb on - strand, within AZOBR_RS03210 at 682.635 kb on - strand, within AZOBR_RS03210 at 682.778 kb on - strand at 683.091 kb on + strand, within AZOBR_RS03215 at 683.477 kb on + strand at 683.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 681,193 + AZOBR_RS03200 0.70 -0.2 681,194 - AZOBR_RS03200 0.71 -1.0 681,342 + -0.8 681,343 - +1.3 681,346 + -1.6 681,346 + +0.9 681,426 + +1.0 681,515 + +2.8 681,545 - -0.3 682,050 + +0.3 682,063 + -0.2 682,063 + +0.1 682,063 + -2.2 682,063 + +3.0 682,064 - +0.0 682,064 - +0.3 682,064 - +1.1 682,079 - +0.3 682,175 + +2.4 682,340 + AZOBR_RS03210 0.32 +0.8 682,341 - AZOBR_RS03210 0.33 -0.6 682,634 + AZOBR_RS03210 0.80 -0.9 682,634 + AZOBR_RS03210 0.80 -0.9 682,634 + AZOBR_RS03210 0.80 -0.6 682,634 + AZOBR_RS03210 0.80 -0.3 682,635 - AZOBR_RS03210 0.80 -2.4 682,635 - AZOBR_RS03210 0.80 -2.8 682,778 - +0.0 683,091 + AZOBR_RS03215 0.41 -0.7 683,477 + +0.2 683,478 - +2.4
Or see this region's nucleotide sequence