Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02945 and AZOBR_RS02950 are separated by 114 nucleotides AZOBR_RS02950 and AZOBR_RS02955 are separated by 35 nucleotides AZOBR_RS02955 and AZOBR_RS02960 are separated by 184 nucleotides
AZOBR_RS02945: AZOBR_RS02945 - hypothetical protein, at 623,936 to 625,753
_RS02945
AZOBR_RS02950: AZOBR_RS02950 - hypothetical protein, at 625,868 to 626,353
_RS02950
AZOBR_RS02955: AZOBR_RS02955 - histidine kinase, at 626,389 to 628,077
_RS02955
AZOBR_RS02960: AZOBR_RS02960 - methylthioribose-1-phosphate isomerase, at 628,262 to 629,362
_RS02960
Position (kb) 626
627
628
629 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 625.731 kb on - strand at 625.731 kb on - strand at 626.093 kb on + strand, within AZOBR_RS02950 at 626.096 kb on + strand, within AZOBR_RS02950 at 626.096 kb on + strand, within AZOBR_RS02950 at 626.096 kb on + strand, within AZOBR_RS02950 at 626.097 kb on - strand, within AZOBR_RS02950 at 626.190 kb on - strand, within AZOBR_RS02950 at 626.190 kb on - strand, within AZOBR_RS02950 at 626.193 kb on - strand, within AZOBR_RS02950 at 626.223 kb on - strand, within AZOBR_RS02950 at 626.295 kb on - strand, within AZOBR_RS02950 at 626.324 kb on + strand at 626.325 kb on - strand at 626.388 kb on - strand at 626.837 kb on + strand, within AZOBR_RS02955 at 626.838 kb on - strand, within AZOBR_RS02955 at 626.838 kb on - strand, within AZOBR_RS02955 at 626.838 kb on - strand, within AZOBR_RS02955 at 626.877 kb on - strand, within AZOBR_RS02955 at 627.126 kb on - strand, within AZOBR_RS02955 at 627.126 kb on - strand, within AZOBR_RS02955 at 627.126 kb on - strand, within AZOBR_RS02955 at 627.126 kb on - strand, within AZOBR_RS02955 at 627.126 kb on - strand, within AZOBR_RS02955 at 627.224 kb on + strand, within AZOBR_RS02955 at 627.224 kb on + strand, within AZOBR_RS02955 at 627.225 kb on - strand, within AZOBR_RS02955 at 627.233 kb on + strand, within AZOBR_RS02955 at 627.233 kb on + strand, within AZOBR_RS02955 at 627.233 kb on + strand, within AZOBR_RS02955 at 627.234 kb on - strand, within AZOBR_RS02955 at 627.234 kb on - strand, within AZOBR_RS02955 at 627.234 kb on - strand, within AZOBR_RS02955 at 627.234 kb on - strand, within AZOBR_RS02955 at 627.234 kb on - strand, within AZOBR_RS02955 at 627.444 kb on - strand, within AZOBR_RS02955 at 627.464 kb on + strand, within AZOBR_RS02955 at 627.479 kb on + strand, within AZOBR_RS02955 at 627.479 kb on + strand, within AZOBR_RS02955 at 627.572 kb on + strand, within AZOBR_RS02955 at 627.572 kb on + strand, within AZOBR_RS02955 at 627.572 kb on + strand, within AZOBR_RS02955 at 627.647 kb on + strand, within AZOBR_RS02955 at 627.647 kb on + strand, within AZOBR_RS02955 at 627.647 kb on + strand, within AZOBR_RS02955 at 627.743 kb on + strand, within AZOBR_RS02955 at 627.744 kb on - strand, within AZOBR_RS02955 at 627.771 kb on - strand, within AZOBR_RS02955 at 628.034 kb on + strand at 628.034 kb on + strand at 628.034 kb on + strand at 628.176 kb on - strand at 628.206 kb on + strand at 628.207 kb on - strand at 628.207 kb on - strand at 628.254 kb on + strand at 628.254 kb on + strand at 628.255 kb on - strand at 628.255 kb on - strand at 628.255 kb on - strand at 628.261 kb on + strand at 628.262 kb on - strand at 628.262 kb on - strand at 628.284 kb on - strand at 628.805 kb on + strand, within AZOBR_RS02960 at 628.806 kb on - strand, within AZOBR_RS02960 at 629.036 kb on + strand, within AZOBR_RS02960 at 629.036 kb on + strand, within AZOBR_RS02960 at 629.036 kb on + strand, within AZOBR_RS02960 at 629.037 kb on - strand, within AZOBR_RS02960
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 625,731 - -1.1 625,731 - -2.0 626,093 + AZOBR_RS02950 0.46 -1.3 626,096 + AZOBR_RS02950 0.47 -3.4 626,096 + AZOBR_RS02950 0.47 -0.5 626,096 + AZOBR_RS02950 0.47 -0.8 626,097 - AZOBR_RS02950 0.47 -0.9 626,190 - AZOBR_RS02950 0.66 +0.8 626,190 - AZOBR_RS02950 0.66 +2.7 626,193 - AZOBR_RS02950 0.67 +2.5 626,223 - AZOBR_RS02950 0.73 -0.1 626,295 - AZOBR_RS02950 0.88 -0.5 626,324 + -2.3 626,325 - -1.5 626,388 - +0.7 626,837 + AZOBR_RS02955 0.27 -0.3 626,838 - AZOBR_RS02955 0.27 +0.2 626,838 - AZOBR_RS02955 0.27 +0.0 626,838 - AZOBR_RS02955 0.27 -0.5 626,877 - AZOBR_RS02955 0.29 -0.9 627,126 - AZOBR_RS02955 0.44 -0.3 627,126 - AZOBR_RS02955 0.44 -0.8 627,126 - AZOBR_RS02955 0.44 +0.5 627,126 - AZOBR_RS02955 0.44 -1.9 627,126 - AZOBR_RS02955 0.44 -0.7 627,224 + AZOBR_RS02955 0.49 -1.1 627,224 + AZOBR_RS02955 0.49 -1.6 627,225 - AZOBR_RS02955 0.49 +0.1 627,233 + AZOBR_RS02955 0.50 -0.7 627,233 + AZOBR_RS02955 0.50 -0.6 627,233 + AZOBR_RS02955 0.50 -0.3 627,234 - AZOBR_RS02955 0.50 +0.4 627,234 - AZOBR_RS02955 0.50 +1.1 627,234 - AZOBR_RS02955 0.50 +0.5 627,234 - AZOBR_RS02955 0.50 +0.2 627,234 - AZOBR_RS02955 0.50 +1.0 627,444 - AZOBR_RS02955 0.62 -1.4 627,464 + AZOBR_RS02955 0.64 -3.0 627,479 + AZOBR_RS02955 0.65 +0.1 627,479 + AZOBR_RS02955 0.65 +1.5 627,572 + AZOBR_RS02955 0.70 -2.5 627,572 + AZOBR_RS02955 0.70 -1.6 627,572 + AZOBR_RS02955 0.70 +0.4 627,647 + AZOBR_RS02955 0.74 +0.1 627,647 + AZOBR_RS02955 0.74 -1.4 627,647 + AZOBR_RS02955 0.74 -0.6 627,743 + AZOBR_RS02955 0.80 -1.2 627,744 - AZOBR_RS02955 0.80 -0.1 627,771 - AZOBR_RS02955 0.82 +0.4 628,034 + -0.7 628,034 + +0.1 628,034 + +1.7 628,176 - +0.8 628,206 + -1.1 628,207 - +0.3 628,207 - +2.4 628,254 + +0.6 628,254 + +1.0 628,255 - -0.3 628,255 - -2.3 628,255 - +0.1 628,261 + +0.6 628,262 - +2.2 628,262 - +2.1 628,284 - +1.1 628,805 + AZOBR_RS02960 0.49 -1.2 628,806 - AZOBR_RS02960 0.49 +0.7 629,036 + AZOBR_RS02960 0.70 +0.1 629,036 + AZOBR_RS02960 0.70 -2.4 629,036 + AZOBR_RS02960 0.70 +0.6 629,037 - AZOBR_RS02960 0.70 -0.6
Or see this region's nucleotide sequence