Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS02935

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS02925 and AZOBR_RS02930 are separated by 131 nucleotidesAZOBR_RS02930 and AZOBR_RS02935 are separated by 218 nucleotidesAZOBR_RS02935 and AZOBR_RS02940 overlap by 1 nucleotides AZOBR_RS02925: AZOBR_RS02925 - SAM-dependent methyltransferase PhcB, at 620,300 to 620,920 _RS02925 AZOBR_RS02930: AZOBR_RS02930 - hypothetical protein, at 621,052 to 621,579 _RS02930 AZOBR_RS02935: AZOBR_RS02935 - small component of pyruvate transporter (yjcH-like) (from data), at 621,798 to 622,100 _RS02935 AZOBR_RS02940: AZOBR_RS02940 - large component of pyruvate transporter (actP-like) (from data), at 622,100 to 623,818 _RS02940 Position (kb) 621 622 623Strain fitness (log2 ratio) -2 -1 0 1 2 3at 621.004 kb on + strandat 621.004 kb on + strandat 621.004 kb on + strandat 621.005 kb on - strandat 621.005 kb on - strandat 621.005 kb on - strandat 621.121 kb on + strand, within AZOBR_RS02930at 621.121 kb on + strand, within AZOBR_RS02930at 621.122 kb on - strand, within AZOBR_RS02930at 621.122 kb on - strand, within AZOBR_RS02930at 621.460 kb on + strand, within AZOBR_RS02930at 621.596 kb on - strandat 621.596 kb on - strandat 621.596 kb on - strandat 621.632 kb on + strandat 621.797 kb on + strandat 621.797 kb on + strandat 621.798 kb on - strandat 621.860 kb on + strand, within AZOBR_RS02935at 621.903 kb on + strand, within AZOBR_RS02935at 621.904 kb on - strand, within AZOBR_RS02935at 621.904 kb on - strand, within AZOBR_RS02935at 622.035 kb on + strand, within AZOBR_RS02935at 622.035 kb on + strand, within AZOBR_RS02935at 622.035 kb on + strand, within AZOBR_RS02935at 622.035 kb on + strand, within AZOBR_RS02935at 622.035 kb on + strand, within AZOBR_RS02935at 622.036 kb on - strand, within AZOBR_RS02935at 622.036 kb on - strand, within AZOBR_RS02935at 622.268 kb on + strandat 622.268 kb on + strandat 622.269 kb on - strandat 622.308 kb on - strand, within AZOBR_RS02940at 622.308 kb on - strand, within AZOBR_RS02940at 622.364 kb on + strand, within AZOBR_RS02940at 622.364 kb on + strand, within AZOBR_RS02940at 622.364 kb on + strand, within AZOBR_RS02940at 622.364 kb on + strand, within AZOBR_RS02940at 622.364 kb on + strand, within AZOBR_RS02940at 622.365 kb on - strand, within AZOBR_RS02940at 622.365 kb on - strand, within AZOBR_RS02940at 622.508 kb on + strand, within AZOBR_RS02940at 622.508 kb on + strand, within AZOBR_RS02940at 622.508 kb on + strand, within AZOBR_RS02940at 622.508 kb on + strand, within AZOBR_RS02940at 622.509 kb on - strand, within AZOBR_RS02940at 622.532 kb on + strand, within AZOBR_RS02940at 622.533 kb on - strand, within AZOBR_RS02940at 622.598 kb on + strand, within AZOBR_RS02940at 622.598 kb on + strand, within AZOBR_RS02940at 622.598 kb on + strand, within AZOBR_RS02940at 622.599 kb on - strand, within AZOBR_RS02940at 622.599 kb on - strand, within AZOBR_RS02940at 622.599 kb on - strand, within AZOBR_RS02940at 622.599 kb on - strand, within AZOBR_RS02940at 622.701 kb on - strand, within AZOBR_RS02940at 623.016 kb on - strand, within AZOBR_RS02940at 623.016 kb on - strand, within AZOBR_RS02940at 623.036 kb on + strand, within AZOBR_RS02940at 623.042 kb on + strand, within AZOBR_RS02940at 623.042 kb on + strand, within AZOBR_RS02940

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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621,004 + -1.3
621,004 + +0.0
621,004 + +1.2
621,005 - -1.1
621,005 - +0.8
621,005 - -1.9
621,121 + AZOBR_RS02930 0.13 -0.5
621,121 + AZOBR_RS02930 0.13 +0.4
621,122 - AZOBR_RS02930 0.13 -0.7
621,122 - AZOBR_RS02930 0.13 -0.1
621,460 + AZOBR_RS02930 0.77 -1.9
621,596 - +3.5
621,596 - +0.7
621,596 - -2.3
621,632 + +1.1
621,797 + +1.8
621,797 + -0.1
621,798 - +0.3
621,860 + AZOBR_RS02935 0.20 -0.7
621,903 + AZOBR_RS02935 0.35 -0.2
621,904 - AZOBR_RS02935 0.35 +0.6
621,904 - AZOBR_RS02935 0.35 -0.1
622,035 + AZOBR_RS02935 0.78 +1.2
622,035 + AZOBR_RS02935 0.78 +0.2
622,035 + AZOBR_RS02935 0.78 -0.4
622,035 + AZOBR_RS02935 0.78 -0.4
622,035 + AZOBR_RS02935 0.78 -1.7
622,036 - AZOBR_RS02935 0.79 +0.4
622,036 - AZOBR_RS02935 0.79 +1.5
622,268 + -0.3
622,268 + +0.6
622,269 - +0.4
622,308 - AZOBR_RS02940 0.12 +0.5
622,308 - AZOBR_RS02940 0.12 -0.4
622,364 + AZOBR_RS02940 0.15 +0.5
622,364 + AZOBR_RS02940 0.15 +0.5
622,364 + AZOBR_RS02940 0.15 -2.1
622,364 + AZOBR_RS02940 0.15 +0.3
622,364 + AZOBR_RS02940 0.15 -0.8
622,365 - AZOBR_RS02940 0.15 +1.1
622,365 - AZOBR_RS02940 0.15 -0.1
622,508 + AZOBR_RS02940 0.24 +1.4
622,508 + AZOBR_RS02940 0.24 +0.3
622,508 + AZOBR_RS02940 0.24 -1.1
622,508 + AZOBR_RS02940 0.24 -0.3
622,509 - AZOBR_RS02940 0.24 -2.3
622,532 + AZOBR_RS02940 0.25 -1.3
622,533 - AZOBR_RS02940 0.25 +1.3
622,598 + AZOBR_RS02940 0.29 +0.0
622,598 + AZOBR_RS02940 0.29 -0.6
622,598 + AZOBR_RS02940 0.29 -1.7
622,599 - AZOBR_RS02940 0.29 +0.3
622,599 - AZOBR_RS02940 0.29 +0.6
622,599 - AZOBR_RS02940 0.29 -0.9
622,599 - AZOBR_RS02940 0.29 +0.8
622,701 - AZOBR_RS02940 0.35 +2.1
623,016 - AZOBR_RS02940 0.53 +0.5
623,016 - AZOBR_RS02940 0.53 +1.2
623,036 + AZOBR_RS02940 0.54 -0.4
623,042 + AZOBR_RS02940 0.55 +0.0
623,042 + AZOBR_RS02940 0.55 +0.1

Or see this region's nucleotide sequence