Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02015 and AZOBR_RS02020 overlap by 4 nucleotides AZOBR_RS02020 and AZOBR_RS02025 are separated by 3 nucleotides AZOBR_RS02025 and AZOBR_RS02030 are separated by 234 nucleotides
AZOBR_RS02015: AZOBR_RS02015 - S-adenosylmethionine decarboxylase, at 412,813 to 413,322
_RS02015
AZOBR_RS02020: AZOBR_RS02020 - spermidine synthase, at 413,319 to 414,179
_RS02020
AZOBR_RS02025: AZOBR_RS02025 - transporter, at 414,183 to 415,673
_RS02025
AZOBR_RS02030: AZOBR_RS02030 - hypothetical protein, at 415,908 to 417,062
_RS02030
Position (kb) 414
415
416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 413.361 kb on - strand at 413.847 kb on + strand, within AZOBR_RS02020 at 413.847 kb on + strand, within AZOBR_RS02020 at 413.847 kb on + strand, within AZOBR_RS02020 at 413.847 kb on + strand, within AZOBR_RS02020 at 413.847 kb on + strand, within AZOBR_RS02020 at 413.848 kb on - strand, within AZOBR_RS02020 at 413.848 kb on - strand, within AZOBR_RS02020 at 413.848 kb on - strand, within AZOBR_RS02020 at 414.000 kb on + strand, within AZOBR_RS02020 at 414.000 kb on + strand, within AZOBR_RS02020 at 414.001 kb on - strand, within AZOBR_RS02020 at 414.001 kb on - strand, within AZOBR_RS02020 at 414.001 kb on - strand, within AZOBR_RS02020 at 414.001 kb on - strand, within AZOBR_RS02020 at 414.004 kb on - strand, within AZOBR_RS02020 at 414.114 kb on + strand at 414.114 kb on + strand at 414.115 kb on - strand at 414.115 kb on - strand at 414.178 kb on - strand at 414.974 kb on - strand, within AZOBR_RS02025 at 415.021 kb on - strand, within AZOBR_RS02025 at 416.026 kb on + strand, within AZOBR_RS02030 at 416.050 kb on + strand, within AZOBR_RS02030 at 416.050 kb on + strand, within AZOBR_RS02030 at 416.051 kb on - strand, within AZOBR_RS02030 at 416.182 kb on + strand, within AZOBR_RS02030 at 416.425 kb on + strand, within AZOBR_RS02030 at 416.425 kb on + strand, within AZOBR_RS02030 at 416.426 kb on - strand, within AZOBR_RS02030 at 416.426 kb on - strand, within AZOBR_RS02030 at 416.629 kb on + strand, within AZOBR_RS02030 at 416.638 kb on + strand, within AZOBR_RS02030 at 416.638 kb on + strand, within AZOBR_RS02030 at 416.638 kb on + strand, within AZOBR_RS02030 at 416.639 kb on - strand, within AZOBR_RS02030 at 416.639 kb on - strand, within AZOBR_RS02030 at 416.639 kb on - strand, within AZOBR_RS02030 at 416.639 kb on - strand, within AZOBR_RS02030
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 413,361 - -1.0 413,847 + AZOBR_RS02020 0.61 -1.1 413,847 + AZOBR_RS02020 0.61 -2.0 413,847 + AZOBR_RS02020 0.61 -0.5 413,847 + AZOBR_RS02020 0.61 -2.6 413,847 + AZOBR_RS02020 0.61 -2.0 413,848 - AZOBR_RS02020 0.61 +1.5 413,848 - AZOBR_RS02020 0.61 -2.4 413,848 - AZOBR_RS02020 0.61 +0.1 414,000 + AZOBR_RS02020 0.79 -0.5 414,000 + AZOBR_RS02020 0.79 -0.7 414,001 - AZOBR_RS02020 0.79 -0.5 414,001 - AZOBR_RS02020 0.79 -0.2 414,001 - AZOBR_RS02020 0.79 -0.7 414,001 - AZOBR_RS02020 0.79 -0.8 414,004 - AZOBR_RS02020 0.80 -1.5 414,114 + -0.5 414,114 + -0.3 414,115 - -3.1 414,115 - +0.3 414,178 - -0.3 414,974 - AZOBR_RS02025 0.53 -0.1 415,021 - AZOBR_RS02025 0.56 +1.7 416,026 + AZOBR_RS02030 0.10 -1.2 416,050 + AZOBR_RS02030 0.12 +2.5 416,050 + AZOBR_RS02030 0.12 -0.5 416,051 - AZOBR_RS02030 0.12 -0.9 416,182 + AZOBR_RS02030 0.24 -0.3 416,425 + AZOBR_RS02030 0.45 -1.1 416,425 + AZOBR_RS02030 0.45 -0.6 416,426 - AZOBR_RS02030 0.45 +0.7 416,426 - AZOBR_RS02030 0.45 +2.5 416,629 + AZOBR_RS02030 0.62 -0.7 416,638 + AZOBR_RS02030 0.63 -0.2 416,638 + AZOBR_RS02030 0.63 +0.3 416,638 + AZOBR_RS02030 0.63 +2.5 416,639 - AZOBR_RS02030 0.63 -0.3 416,639 - AZOBR_RS02030 0.63 -0.5 416,639 - AZOBR_RS02030 0.63 +1.1 416,639 - AZOBR_RS02030 0.63 -0.2
Or see this region's nucleotide sequence