Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02010 and AZOBR_RS02015 are separated by 211 nucleotides AZOBR_RS02015 and AZOBR_RS02020 overlap by 4 nucleotides AZOBR_RS02020 and AZOBR_RS02025 are separated by 3 nucleotides
AZOBR_RS02010: AZOBR_RS02010 - glutamine amidotransferase, at 411,840 to 412,601
_RS02010
AZOBR_RS02015: AZOBR_RS02015 - S-adenosylmethionine decarboxylase, at 412,813 to 413,322
_RS02015
AZOBR_RS02020: AZOBR_RS02020 - spermidine synthase, at 413,319 to 414,179
_RS02020
AZOBR_RS02025: AZOBR_RS02025 - transporter, at 414,183 to 415,673
_RS02025
Position (kb) 412
413
414 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 411.815 kb on + strand at 412.147 kb on + strand, within AZOBR_RS02010 at 412.148 kb on - strand, within AZOBR_RS02010 at 412.192 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.758 kb on + strand at 413.361 kb on - strand at 413.847 kb on + strand, within AZOBR_RS02020 at 413.847 kb on + strand, within AZOBR_RS02020 at 413.847 kb on + strand, within AZOBR_RS02020 at 413.847 kb on + strand, within AZOBR_RS02020 at 413.847 kb on + strand, within AZOBR_RS02020 at 413.848 kb on - strand, within AZOBR_RS02020 at 413.848 kb on - strand, within AZOBR_RS02020 at 413.848 kb on - strand, within AZOBR_RS02020 at 414.000 kb on + strand, within AZOBR_RS02020 at 414.000 kb on + strand, within AZOBR_RS02020 at 414.001 kb on - strand, within AZOBR_RS02020 at 414.001 kb on - strand, within AZOBR_RS02020 at 414.001 kb on - strand, within AZOBR_RS02020 at 414.001 kb on - strand, within AZOBR_RS02020 at 414.004 kb on - strand, within AZOBR_RS02020 at 414.114 kb on + strand at 414.114 kb on + strand at 414.115 kb on - strand at 414.115 kb on - strand at 414.178 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 411,815 + -1.5 412,147 + AZOBR_RS02010 0.40 -0.5 412,148 - AZOBR_RS02010 0.40 -1.6 412,192 + AZOBR_RS02010 0.46 +0.1 412,519 + AZOBR_RS02010 0.89 +0.4 412,519 + AZOBR_RS02010 0.89 -0.7 412,519 + AZOBR_RS02010 0.89 -1.8 412,519 + AZOBR_RS02010 0.89 +0.9 412,519 + AZOBR_RS02010 0.89 +0.5 412,519 + AZOBR_RS02010 0.89 -1.8 412,519 + AZOBR_RS02010 0.89 -0.9 412,519 + AZOBR_RS02010 0.89 -0.0 412,519 + AZOBR_RS02010 0.89 -0.3 412,519 + AZOBR_RS02010 0.89 -0.7 412,519 + AZOBR_RS02010 0.89 +1.6 412,519 + AZOBR_RS02010 0.89 -0.9 412,520 - AZOBR_RS02010 0.89 +1.6 412,520 - AZOBR_RS02010 0.89 -1.0 412,520 - AZOBR_RS02010 0.89 +1.5 412,520 - AZOBR_RS02010 0.89 +0.1 412,520 - AZOBR_RS02010 0.89 -2.6 412,520 - AZOBR_RS02010 0.89 +1.1 412,520 - AZOBR_RS02010 0.89 -1.0 412,520 - AZOBR_RS02010 0.89 -0.4 412,758 + -0.1 413,361 - -1.0 413,847 + AZOBR_RS02020 0.61 -1.1 413,847 + AZOBR_RS02020 0.61 -2.0 413,847 + AZOBR_RS02020 0.61 -0.5 413,847 + AZOBR_RS02020 0.61 -2.6 413,847 + AZOBR_RS02020 0.61 -2.0 413,848 - AZOBR_RS02020 0.61 +1.5 413,848 - AZOBR_RS02020 0.61 -2.4 413,848 - AZOBR_RS02020 0.61 +0.1 414,000 + AZOBR_RS02020 0.79 -0.5 414,000 + AZOBR_RS02020 0.79 -0.7 414,001 - AZOBR_RS02020 0.79 -0.5 414,001 - AZOBR_RS02020 0.79 -0.2 414,001 - AZOBR_RS02020 0.79 -0.7 414,001 - AZOBR_RS02020 0.79 -0.8 414,004 - AZOBR_RS02020 0.80 -1.5 414,114 + -0.5 414,114 + -0.3 414,115 - -3.1 414,115 - +0.3 414,178 - -0.3
Or see this region's nucleotide sequence