Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01760 and AZOBR_RS01765 overlap by 4 nucleotides AZOBR_RS01765 and AZOBR_RS01770 are separated by 9 nucleotides AZOBR_RS01770 and AZOBR_RS01775 overlap by 8 nucleotides AZOBR_RS01775 and AZOBR_RS01780 are separated by 41 nucleotides
AZOBR_RS01760: AZOBR_RS01760 - septum formation protein Maf, at 359,034 to 359,642
_RS01760
AZOBR_RS01765: AZOBR_RS01765 - shikimate 5-dehydrogenase, at 359,639 to 360,478
_RS01765
AZOBR_RS01770: AZOBR_RS01770 - dephospho-CoA kinase, at 360,488 to 361,132
_RS01770
AZOBR_RS01775: AZOBR_RS01775 - DNA polymerase III subunit epsilon, at 361,125 to 361,802
_RS01775
AZOBR_RS01780: AZOBR_RS01780 - quinone oxidoreductase, at 361,844 to 362,818
_RS01780
Position (kb) 360
361
362 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 359.517 kb on + strand, within AZOBR_RS01760 at 359.517 kb on + strand, within AZOBR_RS01760 at 361.103 kb on + strand at 361.103 kb on + strand at 361.248 kb on + strand, within AZOBR_RS01775 at 361.249 kb on - strand, within AZOBR_RS01775 at 361.569 kb on + strand, within AZOBR_RS01775 at 361.612 kb on - strand, within AZOBR_RS01775 at 361.612 kb on - strand, within AZOBR_RS01775 at 361.612 kb on - strand, within AZOBR_RS01775 at 361.612 kb on - strand, within AZOBR_RS01775 at 361.957 kb on + strand, within AZOBR_RS01780 at 361.957 kb on + strand, within AZOBR_RS01780 at 361.958 kb on - strand, within AZOBR_RS01780 at 362.016 kb on + strand, within AZOBR_RS01780 at 362.016 kb on + strand, within AZOBR_RS01780 at 362.017 kb on - strand, within AZOBR_RS01780 at 362.017 kb on - strand, within AZOBR_RS01780 at 362.043 kb on + strand, within AZOBR_RS01780 at 362.043 kb on + strand, within AZOBR_RS01780 at 362.044 kb on - strand, within AZOBR_RS01780 at 362.044 kb on - strand, within AZOBR_RS01780 at 362.044 kb on - strand, within AZOBR_RS01780 at 362.044 kb on - strand, within AZOBR_RS01780 at 362.119 kb on + strand, within AZOBR_RS01780 at 362.119 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 359,517 + AZOBR_RS01760 0.79 -0.8 359,517 + AZOBR_RS01760 0.79 +1.8 361,103 + -0.3 361,103 + -0.5 361,248 + AZOBR_RS01775 0.18 +0.5 361,249 - AZOBR_RS01775 0.18 -0.7 361,569 + AZOBR_RS01775 0.65 -0.3 361,612 - AZOBR_RS01775 0.72 -0.3 361,612 - AZOBR_RS01775 0.72 -0.9 361,612 - AZOBR_RS01775 0.72 -1.1 361,612 - AZOBR_RS01775 0.72 -1.9 361,957 + AZOBR_RS01780 0.12 -0.2 361,957 + AZOBR_RS01780 0.12 -1.8 361,958 - AZOBR_RS01780 0.12 +0.8 362,016 + AZOBR_RS01780 0.18 +0.3 362,016 + AZOBR_RS01780 0.18 +0.7 362,017 - AZOBR_RS01780 0.18 +1.4 362,017 - AZOBR_RS01780 0.18 -0.9 362,043 + AZOBR_RS01780 0.20 +0.3 362,043 + AZOBR_RS01780 0.20 -1.3 362,044 - AZOBR_RS01780 0.21 -0.6 362,044 - AZOBR_RS01780 0.21 -1.1 362,044 - AZOBR_RS01780 0.21 -1.8 362,044 - AZOBR_RS01780 0.21 -0.3 362,119 + AZOBR_RS01780 0.28 -1.0 362,119 + +4.1
Or see this region's nucleotide sequence