Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04397 and SMc04398 overlap by 7 nucleotides SMc04398 and SMc04399 overlap by 8 nucleotides
SMc04397: SMc04397 - L-sorbosone dehydrogenase, NADP dependent protein, at 3,601,190 to 3,602,704
SMc04397
SMc04398: SMc04398 - enoyl-CoA hydratase, at 3,602,698 to 3,603,477
SMc04398
SMc04399: SMc04399 - acyl-COA transferase, at 3,603,470 to 3,605,092
SMc04399
Position (kb)
3602
3603
3604 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3601.828 kb on - strand, within SMc04397 at 3602.222 kb on + strand, within SMc04397 at 3602.223 kb on - strand, within SMc04397 at 3602.261 kb on - strand, within SMc04397 at 3602.275 kb on + strand, within SMc04397 at 3602.276 kb on - strand, within SMc04397 at 3602.276 kb on - strand, within SMc04397 at 3602.276 kb on - strand, within SMc04397 at 3602.281 kb on - strand, within SMc04397 at 3602.320 kb on - strand, within SMc04397 at 3602.553 kb on + strand at 3603.246 kb on - strand, within SMc04398 at 3603.610 kb on + strand at 3603.696 kb on + strand, within SMc04399 at 3603.696 kb on + strand, within SMc04399 at 3603.696 kb on + strand, within SMc04399 at 3603.696 kb on + strand, within SMc04399 at 3603.696 kb on + strand, within SMc04399 at 3603.697 kb on - strand, within SMc04399 at 3603.697 kb on - strand, within SMc04399 at 3603.697 kb on - strand, within SMc04399 at 3603.697 kb on - strand, within SMc04399 at 3603.697 kb on - strand, within SMc04399 at 3603.697 kb on - strand, within SMc04399 at 3603.697 kb on - strand, within SMc04399 at 3604.305 kb on + strand, within SMc04399 at 3604.306 kb on - strand, within SMc04399 at 3604.351 kb on - strand, within SMc04399
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 3,601,828 - SMc04397 0.42 -0.4 3,602,222 + SMc04397 0.68 -0.2 3,602,223 - SMc04397 0.68 -1.5 3,602,261 - SMc04397 0.71 -0.5 3,602,275 + SMc04397 0.72 -0.6 3,602,276 - SMc04397 0.72 +1.3 3,602,276 - SMc04397 0.72 +0.1 3,602,276 - SMc04397 0.72 +0.7 3,602,281 - SMc04397 0.72 -1.1 3,602,320 - SMc04397 0.75 -0.1 3,602,553 + +0.3 3,603,246 - SMc04398 0.70 -1.9 3,603,610 + -0.6 3,603,696 + SMc04399 0.14 +0.0 3,603,696 + SMc04399 0.14 -0.4 3,603,696 + SMc04399 0.14 +0.2 3,603,696 + SMc04399 0.14 +0.1 3,603,696 + SMc04399 0.14 -0.4 3,603,697 - SMc04399 0.14 -0.7 3,603,697 - SMc04399 0.14 -1.1 3,603,697 - SMc04399 0.14 -0.3 3,603,697 - SMc04399 0.14 +0.7 3,603,697 - SMc04399 0.14 -0.1 3,603,697 - SMc04399 0.14 +1.9 3,603,697 - SMc04399 0.14 -0.2 3,604,305 + SMc04399 0.51 +1.0 3,604,306 - SMc04399 0.52 +0.8 3,604,351 - SMc04399 0.54 +0.7
Or see this region's nucleotide sequence