Strain Fitness in Sinorhizobium meliloti 1021 around SMc03059

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03058 and SMc03059 are separated by 318 nucleotidesSMc03059 and SMc03060 are separated by 558 nucleotides SMc03058: SMc03058 - glycosyltransferase, at 753,602 to 754,591 SMc03058 SMc03059: SMc03059 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase, at 754,910 to 755,809 SMc03059 SMc03060: SMc03060 - transcriptional regulator, at 756,368 to 757,438 SMc03060 Position (kb) 754 755 756Strain fitness (log2 ratio) -2 -1 0 1 2at 753.972 kb on - strand, within SMc03058at 753.983 kb on - strand, within SMc03058at 754.060 kb on - strand, within SMc03058at 754.230 kb on - strand, within SMc03058at 754.242 kb on + strand, within SMc03058at 754.243 kb on - strand, within SMc03058at 754.243 kb on - strand, within SMc03058at 754.624 kb on + strandat 754.625 kb on - strandat 754.625 kb on - strandat 754.816 kb on - strandat 754.833 kb on + strandat 754.833 kb on + strandat 754.871 kb on + strandat 754.871 kb on + strandat 755.824 kb on + strandat 755.824 kb on + strandat 755.825 kb on - strandat 755.825 kb on - strandat 755.825 kb on - strandat 755.857 kb on - strandat 755.870 kb on - strandat 755.870 kb on - strandat 756.251 kb on + strandat 756.251 kb on + strandat 756.251 kb on + strandat 756.251 kb on + strandat 756.251 kb on + strandat 756.251 kb on + strandat 756.264 kb on + strandat 756.477 kb on + strand, within SMc03060at 756.494 kb on + strand, within SMc03060at 756.495 kb on - strand, within SMc03060at 756.688 kb on + strand, within SMc03060at 756.689 kb on - strand, within SMc03060

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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753,972 - SMc03058 0.37 +1.9
753,983 - SMc03058 0.38 +0.2
754,060 - SMc03058 0.46 +0.3
754,230 - SMc03058 0.63 -0.3
754,242 + SMc03058 0.65 -1.0
754,243 - SMc03058 0.65 +0.5
754,243 - SMc03058 0.65 +0.7
754,624 + +0.5
754,625 - -0.1
754,625 - +0.1
754,816 - -0.1
754,833 + -0.6
754,833 + -0.1
754,871 + -0.0
754,871 + -1.2
755,824 + -0.2
755,824 + -0.5
755,825 - -0.9
755,825 - +0.3
755,825 - -0.1
755,857 - -0.5
755,870 - -0.5
755,870 - +0.4
756,251 + +0.1
756,251 + -0.5
756,251 + +1.4
756,251 + +0.6
756,251 + -1.2
756,251 + -0.6
756,264 + -0.3
756,477 + SMc03060 0.10 -0.2
756,494 + SMc03060 0.12 -1.9
756,495 - SMc03060 0.12 +0.5
756,688 + SMc03060 0.30 -0.5
756,689 - SMc03060 0.30 -0.2

Or see this region's nucleotide sequence