Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02262 and SMc02263 overlap by 4 nucleotides SMc02263 and SMc02264 are separated by 189 nucleotides SMc02264 and SMc02265 are separated by 93 nucleotides
SMc02262: SMc02262 - aminotransferase, at 626,634 to 627,824
SMc02262
SMc02263: SMc02263 - hypothetical protein, at 627,821 to 629,434
SMc02263
SMc02264: SMc02264 - hypothetical protein, at 629,624 to 630,016
SMc02264
SMc02265: SMc02265 - preprotein translocase subunit SecD/SecF, at 630,110 to 632,644
SMc02265
Position (kb) 627
628
629
630 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 626.829 kb on + strand, within SMc02262 at 626.871 kb on + strand, within SMc02262 at 627.005 kb on - strand, within SMc02262 at 627.015 kb on + strand, within SMc02262 at 627.015 kb on + strand, within SMc02262 at 627.015 kb on + strand, within SMc02262 at 627.016 kb on - strand, within SMc02262 at 627.147 kb on - strand, within SMc02262 at 627.147 kb on - strand, within SMc02262 at 627.247 kb on + strand, within SMc02262 at 627.248 kb on - strand, within SMc02262 at 627.248 kb on - strand, within SMc02262 at 627.248 kb on - strand, within SMc02262 at 627.248 kb on - strand, within SMc02262 at 627.248 kb on - strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.250 kb on - strand, within SMc02262 at 627.469 kb on - strand, within SMc02262 at 627.594 kb on - strand, within SMc02262 at 627.913 kb on + strand at 627.914 kb on - strand at 627.914 kb on - strand at 627.914 kb on - strand at 628.061 kb on - strand, within SMc02263 at 628.670 kb on + strand, within SMc02263 at 628.991 kb on + strand, within SMc02263 at 629.055 kb on - strand, within SMc02263 at 629.055 kb on - strand, within SMc02263 at 629.109 kb on + strand, within SMc02263 at 629.109 kb on + strand, within SMc02263 at 629.109 kb on + strand, within SMc02263 at 629.110 kb on - strand, within SMc02263 at 629.110 kb on - strand, within SMc02263 at 629.231 kb on + strand, within SMc02263 at 629.231 kb on + strand, within SMc02263 at 629.231 kb on + strand, within SMc02263 at 629.231 kb on + strand, within SMc02263 at 629.232 kb on - strand, within SMc02263 at 629.232 kb on - strand, within SMc02263 at 629.232 kb on - strand, within SMc02263 at 629.232 kb on - strand, within SMc02263 at 629.307 kb on - strand at 629.307 kb on - strand at 629.755 kb on + strand, within SMc02264
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 626,829 + SMc02262 0.16 -1.0 626,871 + SMc02262 0.20 -0.6 627,005 - SMc02262 0.31 -0.3 627,015 + SMc02262 0.32 +0.2 627,015 + SMc02262 0.32 -1.6 627,015 + SMc02262 0.32 -0.8 627,016 - SMc02262 0.32 -2.8 627,147 - SMc02262 0.43 +0.2 627,147 - SMc02262 0.43 +0.4 627,247 + SMc02262 0.51 -0.0 627,248 - SMc02262 0.52 +0.2 627,248 - SMc02262 0.52 +0.0 627,248 - SMc02262 0.52 -0.3 627,248 - SMc02262 0.52 -0.3 627,248 - SMc02262 0.52 +0.0 627,249 + SMc02262 0.52 -2.3 627,249 + SMc02262 0.52 +0.5 627,249 + SMc02262 0.52 -1.4 627,249 + SMc02262 0.52 -0.5 627,249 + SMc02262 0.52 +0.6 627,249 + SMc02262 0.52 +1.4 627,250 - SMc02262 0.52 +0.6 627,469 - SMc02262 0.70 +0.1 627,594 - SMc02262 0.81 +0.0 627,913 + +0.6 627,914 - +1.0 627,914 - +0.8 627,914 - +0.2 628,061 - SMc02263 0.15 -0.2 628,670 + SMc02263 0.53 +0.3 628,991 + SMc02263 0.72 +0.6 629,055 - SMc02263 0.76 -0.0 629,055 - SMc02263 0.76 -1.3 629,109 + SMc02263 0.80 +0.3 629,109 + SMc02263 0.80 +0.5 629,109 + SMc02263 0.80 -0.4 629,110 - SMc02263 0.80 -1.2 629,110 - SMc02263 0.80 +0.3 629,231 + SMc02263 0.87 -0.4 629,231 + SMc02263 0.87 -0.4 629,231 + SMc02263 0.87 +1.5 629,231 + SMc02263 0.87 +0.3 629,232 - SMc02263 0.87 -0.3 629,232 - SMc02263 0.87 +0.4 629,232 - SMc02263 0.87 -0.3 629,232 - SMc02263 0.87 +0.8 629,307 - +0.5 629,307 - -0.0 629,755 + SMc02264 0.33 +0.9
Or see this region's nucleotide sequence