Strain Fitness in Sinorhizobium meliloti 1021 around SMc02087

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02088 and SMc02087 are separated by 537 nucleotidesSMc02087 and SMc02086 are separated by 305 nucleotides SMc02088: SMc02088 - hypothetical protein, at 1,621,299 to 1,621,583 SMc02088 SMc02087: SMc02087 - type II citrate synthase, at 1,622,121 to 1,623,410 SMc02087 SMc02086: SMc02086 - hypothetical protein, at 1,623,716 to 1,626,121 SMc02086 Position (kb) 1622 1623 1624Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1621.244 kb on + strandat 1621.253 kb on + strandat 1621.290 kb on + strandat 1621.290 kb on + strandat 1621.315 kb on + strandat 1621.316 kb on - strandat 1621.432 kb on + strand, within SMc02088at 1621.433 kb on - strand, within SMc02088at 1621.433 kb on - strand, within SMc02088at 1621.534 kb on + strand, within SMc02088at 1621.534 kb on + strand, within SMc02088at 1621.534 kb on + strand, within SMc02088at 1621.534 kb on + strand, within SMc02088at 1621.535 kb on - strand, within SMc02088at 1621.535 kb on - strand, within SMc02088at 1621.565 kb on + strandat 1621.567 kb on + strandat 1621.567 kb on + strandat 1621.567 kb on + strandat 1621.567 kb on + strandat 1621.567 kb on + strandat 1621.568 kb on - strandat 1621.568 kb on - strandat 1621.568 kb on - strandat 1621.568 kb on - strandat 1621.568 kb on - strandat 1621.573 kb on + strandat 1621.574 kb on - strandat 1621.664 kb on + strandat 1621.665 kb on - strandat 1621.665 kb on - strandat 1621.665 kb on - strandat 1621.667 kb on + strandat 1621.667 kb on + strandat 1621.667 kb on + strandat 1621.668 kb on - strandat 1621.676 kb on + strandat 1621.677 kb on - strandat 1621.677 kb on - strandat 1621.741 kb on + strandat 1621.816 kb on + strandat 1621.957 kb on + strandat 1621.958 kb on - strandat 1621.960 kb on + strandat 1621.960 kb on + strandat 1621.961 kb on - strandat 1621.961 kb on - strandat 1621.961 kb on - strandat 1621.961 kb on - strandat 1623.481 kb on - strandat 1623.565 kb on + strandat 1623.565 kb on + strandat 1623.566 kb on - strandat 1623.606 kb on + strandat 1623.873 kb on + strandat 1623.874 kb on - strandat 1623.907 kb on - strandat 1623.936 kb on - strandat 1623.936 kb on - strandat 1624.053 kb on + strand, within SMc02086

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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1,621,244 + +0.2
1,621,253 + -0.5
1,621,290 + -1.0
1,621,290 + +0.2
1,621,315 + -0.3
1,621,316 - +1.0
1,621,432 + SMc02088 0.47 +2.2
1,621,433 - SMc02088 0.47 +0.7
1,621,433 - SMc02088 0.47 -0.0
1,621,534 + SMc02088 0.82 -0.2
1,621,534 + SMc02088 0.82 +0.3
1,621,534 + SMc02088 0.82 +0.2
1,621,534 + SMc02088 0.82 +0.1
1,621,535 - SMc02088 0.83 -0.9
1,621,535 - SMc02088 0.83 -1.2
1,621,565 + -0.3
1,621,567 + -0.4
1,621,567 + -0.3
1,621,567 + +0.1
1,621,567 + +0.1
1,621,567 + -0.4
1,621,568 - +0.2
1,621,568 - +0.5
1,621,568 - -0.2
1,621,568 - -0.5
1,621,568 - +1.4
1,621,573 + +0.6
1,621,574 - +1.4
1,621,664 + -0.9
1,621,665 - -0.2
1,621,665 - +0.6
1,621,665 - +0.0
1,621,667 + +1.1
1,621,667 + -0.2
1,621,667 + -1.0
1,621,668 - +0.9
1,621,676 + -1.2
1,621,677 - -1.4
1,621,677 - -1.0
1,621,741 + -0.8
1,621,816 + -0.3
1,621,957 + -0.9
1,621,958 - -0.2
1,621,960 + +0.7
1,621,960 + -0.5
1,621,961 - +0.7
1,621,961 - -0.1
1,621,961 - +0.1
1,621,961 - -2.8
1,623,481 - -0.2
1,623,565 + -0.4
1,623,565 + -0.7
1,623,566 - +0.0
1,623,606 + -1.1
1,623,873 + +0.1
1,623,874 - +0.3
1,623,907 - +0.7
1,623,936 - +0.2
1,623,936 - -0.4
1,624,053 + SMc02086 0.14 -0.1

Or see this region's nucleotide sequence