Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01345 and SMc01344 are separated by 6 nucleotides SMc01344 and SMc01343 are separated by 23 nucleotides SMc01343 and SMc01342 are separated by 139 nucleotides SMc01342 and SMc01341 are separated by 53 nucleotides
SMc01345: SMc01345 - acetyl-CoA carboxylase biotin carboxylase subunit, at 1,435,047 to 1,436,396
SMc01345
SMc01344: SMc01344 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 1,436,403 to 1,436,879
SMc01344
SMc01343: SMc01343 - 3-dehydroquinate dehydratase, at 1,436,903 to 1,437,349
SMc01343
SMc01342: SMc01342 - hypothetical protein, at 1,437,489 to 1,438,256
SMc01342
SMc01341: SMc01341 - hypothetical protein, at 1,438,310 to 1,438,459
SMc01341
Position (kb)
1436
1437
1438 Strain fitness (log2 ratio)
-1
0
1
2 at 1436.931 kb on - strand at 1437.350 kb on - strand at 1437.383 kb on - strand at 1437.383 kb on - strand at 1437.383 kb on - strand at 1437.383 kb on - strand at 1437.385 kb on - strand at 1437.586 kb on + strand, within SMc01342 at 1437.586 kb on + strand, within SMc01342 at 1437.586 kb on + strand, within SMc01342 at 1437.626 kb on + strand, within SMc01342 at 1437.626 kb on + strand, within SMc01342 at 1437.628 kb on + strand, within SMc01342 at 1437.653 kb on - strand, within SMc01342 at 1437.653 kb on - strand, within SMc01342 at 1437.779 kb on - strand, within SMc01342 at 1437.928 kb on + strand, within SMc01342 at 1437.941 kb on - strand, within SMc01342 at 1437.990 kb on + strand, within SMc01342 at 1437.990 kb on + strand, within SMc01342 at 1437.991 kb on - strand, within SMc01342 at 1438.126 kb on + strand, within SMc01342 at 1438.127 kb on - strand, within SMc01342 at 1438.280 kb on + strand at 1438.280 kb on + strand at 1438.280 kb on + strand at 1438.280 kb on + strand at 1438.281 kb on - strand at 1438.281 kb on - strand at 1438.291 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 1,436,931 - -0.1 1,437,350 - -1.4 1,437,383 - -0.1 1,437,383 - +0.8 1,437,383 - -0.7 1,437,383 - +0.7 1,437,385 - -0.6 1,437,586 + SMc01342 0.13 +2.1 1,437,586 + SMc01342 0.13 -0.1 1,437,586 + SMc01342 0.13 -1.1 1,437,626 + SMc01342 0.18 -1.3 1,437,626 + SMc01342 0.18 +1.0 1,437,628 + SMc01342 0.18 +0.9 1,437,653 - SMc01342 0.21 +1.3 1,437,653 - SMc01342 0.21 +0.4 1,437,779 - SMc01342 0.38 -0.7 1,437,928 + SMc01342 0.57 +0.7 1,437,941 - SMc01342 0.59 +0.6 1,437,990 + SMc01342 0.65 -0.1 1,437,990 + SMc01342 0.65 +0.3 1,437,991 - SMc01342 0.65 +1.0 1,438,126 + SMc01342 0.83 +0.3 1,438,127 - SMc01342 0.83 -0.7 1,438,280 + -0.3 1,438,280 + +1.1 1,438,280 + -0.8 1,438,280 + -1.0 1,438,281 - -0.2 1,438,281 - +0.0 1,438,291 + -0.6
Or see this region's nucleotide sequence