Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01394 and SMc01097 are separated by 253 nucleotides SMc01097 and SMc01096 overlap by 14 nucleotides SMc01096 and SMc01095 are separated by 186 nucleotides
SMc01394: SMc01394 - hypothetical protein, at 458,431 to 458,886
SMc01394
SMc01097: SMc01097 - hypothetical protein, at 459,140 to 459,736
SMc01097
SMc01096: SMc01096 - succinyl-diaminopimelate desuccinylase, at 459,723 to 460,916
SMc01096
SMc01095: SMc01095 - multidrug-efflux system transmembrane protein, at 461,103 to 464,288
SMc01095
Position (kb) 459
460
461 Strain fitness (log2 ratio) -2
-1
0
1 at 459.372 kb on + strand, within SMc01097 at 459.372 kb on + strand, within SMc01097 at 459.373 kb on - strand, within SMc01097 at 459.373 kb on - strand, within SMc01097 at 459.707 kb on - strand at 459.707 kb on - strand at 459.707 kb on - strand at 459.707 kb on - strand at 459.708 kb on + strand at 459.708 kb on + strand at 459.708 kb on + strand at 459.709 kb on - strand at 459.709 kb on - strand at 459.709 kb on - strand at 459.709 kb on - strand at 459.709 kb on - strand at 459.709 kb on - strand at 459.709 kb on - strand at 460.924 kb on - strand at 460.924 kb on - strand at 460.924 kb on - strand at 461.133 kb on + strand at 461.133 kb on + strand at 461.133 kb on + strand at 461.133 kb on + strand at 461.133 kb on + strand at 461.134 kb on - strand at 461.134 kb on - strand at 461.134 kb on - strand at 461.135 kb on + strand at 461.135 kb on + strand at 461.136 kb on - strand at 461.136 kb on - strand at 461.191 kb on + strand at 461.191 kb on + strand at 461.191 kb on + strand at 461.192 kb on - strand at 461.192 kb on - strand at 461.192 kb on - strand at 461.439 kb on - strand, within SMc01095 at 461.473 kb on - strand, within SMc01095 at 461.590 kb on + strand, within SMc01095 at 461.590 kb on + strand, within SMc01095 at 461.590 kb on + strand, within SMc01095 at 461.591 kb on - strand, within SMc01095 at 461.611 kb on + strand, within SMc01095 at 461.612 kb on - strand, within SMc01095 at 461.612 kb on - strand, within SMc01095 at 461.675 kb on - strand, within SMc01095 at 461.695 kb on + strand, within SMc01095 at 461.696 kb on - strand, within SMc01095 at 461.789 kb on + strand, within SMc01095
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 459,372 + SMc01097 0.39 -1.0 459,372 + SMc01097 0.39 -1.4 459,373 - SMc01097 0.39 -0.2 459,373 - SMc01097 0.39 -0.7 459,707 - -0.1 459,707 - +1.2 459,707 - -1.0 459,707 - -0.2 459,708 + +0.1 459,708 + -0.4 459,708 + +0.8 459,709 - -1.5 459,709 - -1.4 459,709 - -0.0 459,709 - +0.2 459,709 - -1.7 459,709 - -0.5 459,709 - +0.6 460,924 - -0.1 460,924 - -0.9 460,924 - +1.6 461,133 + +0.4 461,133 + -0.7 461,133 + +0.4 461,133 + -0.4 461,133 + +0.3 461,134 - -1.8 461,134 - +1.1 461,134 - +0.3 461,135 + +0.2 461,135 + -0.5 461,136 - +0.3 461,136 - +1.6 461,191 + +0.4 461,191 + -0.1 461,191 + +0.9 461,192 - +0.3 461,192 - +0.2 461,192 - -0.4 461,439 - SMc01095 0.11 -0.1 461,473 - SMc01095 0.12 +1.6 461,590 + SMc01095 0.15 +0.4 461,590 + SMc01095 0.15 -0.3 461,590 + SMc01095 0.15 +1.1 461,591 - SMc01095 0.15 -0.3 461,611 + SMc01095 0.16 +0.6 461,612 - SMc01095 0.16 -0.4 461,612 - SMc01095 0.16 +0.3 461,675 - SMc01095 0.18 +0.3 461,695 + SMc01095 0.19 -0.1 461,696 - SMc01095 0.19 +0.2 461,789 + SMc01095 0.22 +0.8
Or see this region's nucleotide sequence