Strain Fitness in Sinorhizobium meliloti 1021 around SMc01030

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01029 and SMc01030 are separated by 136 nucleotidesSMc01030 and SMc01031 are separated by 17 nucleotides SMc01029: SMc01029 - hypothetical protein, at 1,555,529 to 1,555,810 SMc01029 SMc01030: SMc01030 - pyruvate dehydrogenase alpha2 subunit protein, at 1,555,947 to 1,556,993 SMc01030 SMc01031: SMc01031 - pyruvate dehydrogenase subunit beta, at 1,557,011 to 1,558,393 SMc01031 Position (kb) 1555 1556 1557Strain fitness (log2 ratio) -1 0 1at 1555.183 kb on + strandat 1555.183 kb on + strandat 1555.183 kb on + strandat 1555.183 kb on + strandat 1555.183 kb on + strandat 1555.234 kb on - strandat 1555.234 kb on - strandat 1555.394 kb on + strandat 1555.394 kb on + strandat 1555.403 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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1,555,183 + +0.6
1,555,183 + -0.9
1,555,183 + +0.1
1,555,183 + -0.0
1,555,183 + -0.6
1,555,234 - +0.9
1,555,234 - +0.4
1,555,394 + +0.8
1,555,394 + +0.0
1,555,403 + -0.8

Or see this region's nucleotide sequence