Strain Fitness in Sinorhizobium meliloti 1021 around SMc00833

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00832 and SMc00833 overlap by 4 nucleotidesSMc00833 and SMc00926 are separated by 94 nucleotides SMc00832: SMc00832 - D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) (from data), at 853,444 to 854,883 SMc00832 SMc00833: SMc00833 - D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) (from data), at 854,880 to 856,097 SMc00833 SMc00926: SMc00926 - D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) (from data), at 856,192 to 857,523 SMc00926 Position (kb) 854 855 856 857Strain fitness (log2 ratio) -2 -1 0 1 2at 853.910 kb on + strand, within SMc00832at 853.958 kb on - strand, within SMc00832at 853.958 kb on - strand, within SMc00832at 853.965 kb on + strand, within SMc00832at 854.053 kb on + strand, within SMc00832at 854.454 kb on + strand, within SMc00832at 854.491 kb on + strand, within SMc00832at 854.491 kb on + strand, within SMc00832at 854.492 kb on - strand, within SMc00832at 854.492 kb on - strand, within SMc00832at 854.492 kb on - strand, within SMc00832at 854.493 kb on + strand, within SMc00832at 854.493 kb on + strand, within SMc00832at 854.493 kb on + strand, within SMc00832at 854.493 kb on + strand, within SMc00832at 854.493 kb on + strand, within SMc00832at 854.493 kb on + strand, within SMc00832at 854.493 kb on + strand, within SMc00832at 854.494 kb on - strand, within SMc00832at 854.494 kb on - strand, within SMc00832at 854.494 kb on - strand, within SMc00832at 854.632 kb on + strand, within SMc00832at 854.632 kb on + strand, within SMc00832at 854.687 kb on + strand, within SMc00832at 854.687 kb on + strand, within SMc00832at 854.773 kb on + strandat 854.835 kb on + strandat 854.836 kb on - strandat 854.836 kb on - strandat 854.836 kb on - strandat 855.054 kb on + strand, within SMc00833at 855.054 kb on + strand, within SMc00833at 855.054 kb on + strand, within SMc00833at 855.054 kb on + strand, within SMc00833at 855.055 kb on - strand, within SMc00833at 855.240 kb on + strand, within SMc00833at 855.241 kb on - strand, within SMc00833at 855.307 kb on + strand, within SMc00833at 855.307 kb on + strand, within SMc00833at 855.731 kb on - strand, within SMc00833at 855.843 kb on + strand, within SMc00833at 855.843 kb on + strand, within SMc00833at 855.843 kb on + strand, within SMc00833at 855.843 kb on + strand, within SMc00833at 855.912 kb on + strand, within SMc00833at 855.913 kb on - strand, within SMc00833at 855.913 kb on - strand, within SMc00833at 855.915 kb on - strand, within SMc00833at 856.058 kb on - strandat 856.058 kb on - strandat 856.058 kb on - strandat 856.096 kb on - strandat 856.127 kb on + strandat 856.128 kb on - strandat 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.343 kb on - strand, within SMc00926at 856.387 kb on + strand, within SMc00926at 856.387 kb on + strand, within SMc00926at 856.504 kb on + strand, within SMc00926at 856.504 kb on + strand, within SMc00926at 856.504 kb on + strand, within SMc00926at 856.505 kb on - strand, within SMc00926at 856.505 kb on - strand, within SMc00926at 856.505 kb on - strand, within SMc00926at 856.505 kb on - strand, within SMc00926at 856.549 kb on + strand, within SMc00926at 856.549 kb on + strandat 856.550 kb on - strand, within SMc00926at 856.551 kb on + strand, within SMc00926at 856.551 kb on + strand, within SMc00926at 856.552 kb on - strand, within SMc00926at 856.552 kb on - strand, within SMc00926at 856.762 kb on + strand, within SMc00926at 857.026 kb on - strand, within SMc00926at 857.026 kb on - strand, within SMc00926at 857.059 kb on + strand, within SMc00926at 857.060 kb on - strand, within SMc00926at 857.067 kb on + strand, within SMc00926at 857.068 kb on - strand, within SMc00926at 857.068 kb on - strand, within SMc00926at 857.068 kb on - strand, within SMc00926at 857.068 kb on - strand, within SMc00926at 857.089 kb on + strand, within SMc00926at 857.089 kb on + strand, within SMc00926at 857.089 kb on + strand, within SMc00926at 857.090 kb on - strand, within SMc00926

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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853,910 + SMc00832 0.32 -2.0
853,958 - SMc00832 0.36 -2.2
853,958 - SMc00832 0.36 -0.1
853,965 + SMc00832 0.36 -0.1
854,053 + SMc00832 0.42 +0.2
854,454 + SMc00832 0.70 -1.5
854,491 + SMc00832 0.73 -0.3
854,491 + SMc00832 0.73 -1.1
854,492 - SMc00832 0.73 -1.3
854,492 - SMc00832 0.73 -0.8
854,492 - SMc00832 0.73 +0.1
854,493 + SMc00832 0.73 -1.2
854,493 + SMc00832 0.73 -1.6
854,493 + SMc00832 0.73 +0.0
854,493 + SMc00832 0.73 -0.3
854,493 + SMc00832 0.73 -0.4
854,493 + SMc00832 0.73 +1.5
854,493 + SMc00832 0.73 -0.5
854,494 - SMc00832 0.73 -0.8
854,494 - SMc00832 0.73 -2.2
854,494 - SMc00832 0.73 +0.4
854,632 + SMc00832 0.82 +0.4
854,632 + SMc00832 0.82 -0.3
854,687 + SMc00832 0.86 -1.3
854,687 + SMc00832 0.86 -0.6
854,773 + -0.2
854,835 + -0.3
854,836 - -0.8
854,836 - +0.1
854,836 - +1.7
855,054 + SMc00833 0.14 -0.6
855,054 + SMc00833 0.14 -0.4
855,054 + SMc00833 0.14 -0.7
855,054 + SMc00833 0.14 -1.6
855,055 - SMc00833 0.14 -1.1
855,240 + SMc00833 0.30 -2.0
855,241 - SMc00833 0.30 -1.1
855,307 + SMc00833 0.35 -0.4
855,307 + SMc00833 0.35 -0.8
855,731 - SMc00833 0.70 +0.2
855,843 + SMc00833 0.79 -0.1
855,843 + SMc00833 0.79 -0.8
855,843 + SMc00833 0.79 -0.2
855,843 + SMc00833 0.79 -0.2
855,912 + SMc00833 0.85 -1.0
855,913 - SMc00833 0.85 +0.2
855,913 - SMc00833 0.85 -0.1
855,915 - SMc00833 0.85 -0.5
856,058 - -0.5
856,058 - -0.8
856,058 - -0.7
856,096 - +0.3
856,127 + -1.5
856,128 - -0.1
856,342 + SMc00926 0.11 -0.1
856,342 + SMc00926 0.11 +0.8
856,342 + SMc00926 0.11 -0.8
856,342 + SMc00926 0.11 -1.8
856,342 + SMc00926 0.11 -2.2
856,342 + SMc00926 0.11 -0.8
856,342 + SMc00926 0.11 +0.4
856,342 + SMc00926 0.11 -0.5
856,342 + SMc00926 0.11 -0.8
856,343 - SMc00926 0.11 -1.4
856,387 + SMc00926 0.15 -1.1
856,387 + SMc00926 0.15 -1.8
856,504 + SMc00926 0.23 -1.5
856,504 + SMc00926 0.23 +0.1
856,504 + SMc00926 0.23 -0.8
856,505 - SMc00926 0.23 -1.1
856,505 - SMc00926 0.23 -0.8
856,505 - SMc00926 0.23 -0.3
856,505 - SMc00926 0.23 -0.4
856,549 + SMc00926 0.27 -0.5
856,549 + +2.5
856,550 - SMc00926 0.27 -1.1
856,551 + SMc00926 0.27 -0.8
856,551 + SMc00926 0.27 -0.5
856,552 - SMc00926 0.27 -0.9
856,552 - SMc00926 0.27 -0.7
856,762 + SMc00926 0.43 -1.3
857,026 - SMc00926 0.63 -0.7
857,026 - SMc00926 0.63 -0.6
857,059 + SMc00926 0.65 -0.4
857,060 - SMc00926 0.65 -0.8
857,067 + SMc00926 0.66 -0.9
857,068 - SMc00926 0.66 -0.5
857,068 - SMc00926 0.66 -1.0
857,068 - SMc00926 0.66 -0.3
857,068 - SMc00926 0.66 -0.4
857,089 + SMc00926 0.67 -0.7
857,089 + SMc00926 0.67 -0.8
857,089 + SMc00926 0.67 -0.2
857,090 - SMc00926 0.67 -0.6

Or see this region's nucleotide sequence