Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00831 and SMc00832 are separated by 199 nucleotides SMc00832 and SMc00833 overlap by 4 nucleotides
SMc00831: SMc00831 - transcriptional regulator, at 852,348 to 853,244
SMc00831
SMc00832: SMc00832 - D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) <small>(from data)</small>, at 853,444 to 854,883
SMc00832
SMc00833: SMc00833 - D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) <small>(from data)</small>, at 854,880 to 856,097
SMc00833
Position (kb) 853
854
855 Strain fitness (log2 ratio) -2
-1
0
1
2 at 852.733 kb on + strand, within SMc00831 at 852.734 kb on - strand, within SMc00831 at 853.000 kb on + strand, within SMc00831 at 853.000 kb on + strand, within SMc00831 at 853.000 kb on + strand, within SMc00831 at 853.001 kb on - strand, within SMc00831 at 853.001 kb on - strand, within SMc00831 at 853.001 kb on - strand, within SMc00831 at 853.048 kb on + strand, within SMc00831 at 853.048 kb on + strand, within SMc00831 at 853.048 kb on + strand, within SMc00831 at 853.049 kb on - strand, within SMc00831 at 853.049 kb on - strand, within SMc00831 at 853.190 kb on + strand at 853.190 kb on + strand at 853.191 kb on - strand at 853.191 kb on - strand at 853.191 kb on - strand at 853.311 kb on - strand at 853.312 kb on + strand at 853.313 kb on - strand at 853.313 kb on - strand at 853.352 kb on + strand at 853.352 kb on + strand at 853.352 kb on + strand at 853.353 kb on - strand at 853.353 kb on - strand at 853.353 kb on - strand at 853.663 kb on + strand, within SMc00832 at 853.663 kb on + strand, within SMc00832 at 853.663 kb on + strand, within SMc00832 at 853.676 kb on - strand, within SMc00832 at 853.839 kb on + strand, within SMc00832 at 853.873 kb on + strand, within SMc00832 at 853.910 kb on + strand, within SMc00832 at 853.958 kb on - strand, within SMc00832 at 853.958 kb on - strand, within SMc00832 at 853.965 kb on + strand, within SMc00832 at 854.053 kb on + strand, within SMc00832 at 854.454 kb on + strand, within SMc00832 at 854.491 kb on + strand, within SMc00832 at 854.491 kb on + strand, within SMc00832 at 854.492 kb on - strand, within SMc00832 at 854.492 kb on - strand, within SMc00832 at 854.492 kb on - strand, within SMc00832 at 854.493 kb on + strand, within SMc00832 at 854.493 kb on + strand, within SMc00832 at 854.493 kb on + strand, within SMc00832 at 854.493 kb on + strand, within SMc00832 at 854.493 kb on + strand, within SMc00832 at 854.493 kb on + strand, within SMc00832 at 854.493 kb on + strand, within SMc00832 at 854.494 kb on - strand, within SMc00832 at 854.494 kb on - strand, within SMc00832 at 854.494 kb on - strand, within SMc00832 at 854.632 kb on + strand, within SMc00832 at 854.632 kb on + strand, within SMc00832 at 854.687 kb on + strand, within SMc00832 at 854.687 kb on + strand, within SMc00832 at 854.773 kb on + strand at 854.835 kb on + strand at 854.836 kb on - strand at 854.836 kb on - strand at 854.836 kb on - strand at 855.054 kb on + strand, within SMc00833 at 855.054 kb on + strand, within SMc00833 at 855.054 kb on + strand, within SMc00833 at 855.054 kb on + strand, within SMc00833 at 855.055 kb on - strand, within SMc00833 at 855.240 kb on + strand, within SMc00833 at 855.241 kb on - strand, within SMc00833 at 855.307 kb on + strand, within SMc00833 at 855.307 kb on + strand, within SMc00833 at 855.731 kb on - strand, within SMc00833 at 855.843 kb on + strand, within SMc00833 at 855.843 kb on + strand, within SMc00833 at 855.843 kb on + strand, within SMc00833 at 855.843 kb on + strand, within SMc00833
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 852,733 + SMc00831 0.43 -1.7 852,734 - SMc00831 0.43 +1.0 853,000 + SMc00831 0.73 +0.5 853,000 + SMc00831 0.73 +0.5 853,000 + SMc00831 0.73 +2.5 853,001 - SMc00831 0.73 +0.4 853,001 - SMc00831 0.73 +0.3 853,001 - SMc00831 0.73 -1.8 853,048 + SMc00831 0.78 +1.5 853,048 + SMc00831 0.78 +1.3 853,048 + SMc00831 0.78 -0.3 853,049 - SMc00831 0.78 -0.1 853,049 - SMc00831 0.78 -1.3 853,190 + -0.3 853,190 + +0.9 853,191 - -0.3 853,191 - +0.3 853,191 - +1.0 853,311 - +0.6 853,312 + +0.6 853,313 - +0.4 853,313 - +0.3 853,352 + +0.0 853,352 + -0.1 853,352 + -1.8 853,353 - -0.1 853,353 - +0.5 853,353 - -0.1 853,663 + SMc00832 0.15 +0.2 853,663 + SMc00832 0.15 -1.3 853,663 + SMc00832 0.15 -0.6 853,676 - SMc00832 0.16 -0.5 853,839 + SMc00832 0.27 -0.5 853,873 + SMc00832 0.30 -0.7 853,910 + SMc00832 0.32 -2.0 853,958 - SMc00832 0.36 -2.2 853,958 - SMc00832 0.36 -0.1 853,965 + SMc00832 0.36 -0.1 854,053 + SMc00832 0.42 +0.2 854,454 + SMc00832 0.70 -1.5 854,491 + SMc00832 0.73 -0.3 854,491 + SMc00832 0.73 -1.1 854,492 - SMc00832 0.73 -1.3 854,492 - SMc00832 0.73 -0.8 854,492 - SMc00832 0.73 +0.1 854,493 + SMc00832 0.73 -1.2 854,493 + SMc00832 0.73 -1.6 854,493 + SMc00832 0.73 +0.0 854,493 + SMc00832 0.73 -0.3 854,493 + SMc00832 0.73 -0.4 854,493 + SMc00832 0.73 +1.5 854,493 + SMc00832 0.73 -0.5 854,494 - SMc00832 0.73 -0.8 854,494 - SMc00832 0.73 -2.2 854,494 - SMc00832 0.73 +0.4 854,632 + SMc00832 0.82 +0.4 854,632 + SMc00832 0.82 -0.3 854,687 + SMc00832 0.86 -1.3 854,687 + SMc00832 0.86 -0.6 854,773 + -0.2 854,835 + -0.3 854,836 - -0.8 854,836 - +0.1 854,836 - +1.7 855,054 + SMc00833 0.14 -0.6 855,054 + SMc00833 0.14 -0.4 855,054 + SMc00833 0.14 -0.7 855,054 + SMc00833 0.14 -1.6 855,055 - SMc00833 0.14 -1.1 855,240 + SMc00833 0.30 -2.0 855,241 - SMc00833 0.30 -1.1 855,307 + SMc00833 0.35 -0.4 855,307 + SMc00833 0.35 -0.8 855,731 - SMc00833 0.70 +0.2 855,843 + SMc00833 0.79 -0.1 855,843 + SMc00833 0.79 -0.8 855,843 + SMc00833 0.79 -0.2 855,843 + SMc00833 0.79 -0.2
Or see this region's nucleotide sequence