Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00697 and SMc00696 overlap by 4 nucleotides SMc00696 and SMc00695 are separated by 4 nucleotides SMc00695 and SMc00694 are separated by 84 nucleotides SMc00694 and SMc00693 overlap by 4 nucleotides
SMc00697: SMc00697 - hypothetical protein, at 2,882,239 to 2,883,543
SMc00697
SMc00696: SMc00696 - 3-dehydroquinate synthase, at 2,883,540 to 2,884,673
SMc00696
SMc00695: SMc00695 - shikimate kinase, at 2,884,678 to 2,885,256
SMc00695
SMc00694: SMc00694 - hypothetical protein, at 2,885,341 to 2,885,643
SMc00694
SMc00693: SMc00693 - hypothetical protein, at 2,885,640 to 2,885,915
SMc00693
Position (kb)
2883
2884
2885 Strain fitness (log2 ratio)
-1
0
1
2 at 2882.814 kb on + strand, within SMc00697 at 2882.815 kb on - strand, within SMc00697 at 2882.815 kb on - strand, within SMc00697 at 2883.101 kb on - strand, within SMc00697 at 2883.358 kb on + strand, within SMc00697 at 2883.358 kb on + strand, within SMc00697 at 2883.359 kb on - strand, within SMc00697 at 2883.359 kb on - strand, within SMc00697 at 2883.409 kb on - strand, within SMc00697 at 2883.472 kb on - strand at 2883.510 kb on - strand at 2885.338 kb on + strand at 2885.339 kb on - strand at 2885.339 kb on - strand at 2885.339 kb on - strand at 2885.342 kb on + strand at 2885.366 kb on + strand at 2885.397 kb on + strand, within SMc00694 at 2885.397 kb on + strand, within SMc00694 at 2885.397 kb on + strand, within SMc00694 at 2885.401 kb on + strand, within SMc00694 at 2885.402 kb on - strand, within SMc00694 at 2885.402 kb on - strand, within SMc00694 at 2885.423 kb on + strand, within SMc00694 at 2885.424 kb on - strand, within SMc00694 at 2885.458 kb on - strand, within SMc00694 at 2885.458 kb on - strand, within SMc00694 at 2885.546 kb on + strand, within SMc00694 at 2885.546 kb on + strand, within SMc00694 at 2885.546 kb on + strand, within SMc00694 at 2885.547 kb on - strand, within SMc00694 at 2885.547 kb on - strand, within SMc00694 at 2885.547 kb on - strand, within SMc00694 at 2885.568 kb on + strand, within SMc00694 at 2885.600 kb on - strand, within SMc00694 at 2885.600 kb on - strand, within SMc00694
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 2,882,814 + SMc00697 0.44 +0.5 2,882,815 - SMc00697 0.44 -0.2 2,882,815 - SMc00697 0.44 -0.4 2,883,101 - SMc00697 0.66 +0.1 2,883,358 + SMc00697 0.86 -0.2 2,883,358 + SMc00697 0.86 +0.2 2,883,359 - SMc00697 0.86 +0.5 2,883,359 - SMc00697 0.86 -0.6 2,883,409 - SMc00697 0.90 +0.5 2,883,472 - +0.9 2,883,510 - -1.2 2,885,338 + -0.6 2,885,339 - -0.8 2,885,339 - +0.2 2,885,339 - -0.4 2,885,342 + -0.2 2,885,366 + -0.0 2,885,397 + SMc00694 0.18 -0.0 2,885,397 + SMc00694 0.18 +0.1 2,885,397 + SMc00694 0.18 -0.1 2,885,401 + SMc00694 0.20 +2.1 2,885,402 - SMc00694 0.20 +0.6 2,885,402 - SMc00694 0.20 +0.4 2,885,423 + SMc00694 0.27 -0.2 2,885,424 - SMc00694 0.27 +0.2 2,885,458 - SMc00694 0.39 +0.6 2,885,458 - SMc00694 0.39 -0.1 2,885,546 + SMc00694 0.68 -0.0 2,885,546 + SMc00694 0.68 +1.0 2,885,546 + SMc00694 0.68 -0.1 2,885,547 - SMc00694 0.68 +0.7 2,885,547 - SMc00694 0.68 +0.0 2,885,547 - SMc00694 0.68 -0.2 2,885,568 + SMc00694 0.75 -0.0 2,885,600 - SMc00694 0.85 -0.8 2,885,600 - SMc00694 0.85 +0.2
Or see this region's nucleotide sequence