Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00692 and SMc00691 overlap by 4 nucleotides SMc00691 and SMc00690 are separated by 63 nucleotides SMc00690 and SMc00689 are separated by 244 nucleotides
SMc00692: SMc00692 - signal peptide protein, at 2,886,203 to 2,886,352
SMc00692
SMc00691: SMc00691 - site-specific tyrosine recombinase XerD, at 2,886,349 to 2,887,284
SMc00691
SMc00690: SMc00690 - acetyl-CoA carboxylase carboxyltransferase subunit alpha, at 2,887,348 to 2,888,301
SMc00690
SMc00689: SMc00689 - lipoprotein, at 2,888,546 to 2,889,988
SMc00689
Position (kb)
2887
2888
2889 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2886.357 kb on + strand at 2886.357 kb on + strand at 2886.358 kb on - strand at 2886.370 kb on + strand at 2886.370 kb on + strand at 2886.370 kb on + strand at 2886.371 kb on - strand at 2886.436 kb on + strand at 2886.523 kb on + strand, within SMc00691 at 2886.523 kb on + strand, within SMc00691 at 2886.523 kb on + strand, within SMc00691 at 2886.523 kb on + strand, within SMc00691 at 2886.599 kb on - strand, within SMc00691 at 2887.158 kb on - strand, within SMc00691 at 2887.202 kb on - strand at 2887.203 kb on + strand at 2887.282 kb on + strand at 2887.282 kb on + strand at 2888.345 kb on + strand at 2888.396 kb on + strand at 2888.463 kb on + strand at 2888.471 kb on + strand at 2888.517 kb on + strand at 2888.518 kb on - strand at 2888.888 kb on + strand, within SMc00689 at 2888.922 kb on - strand, within SMc00689 at 2888.922 kb on - strand, within SMc00689 at 2889.254 kb on + strand, within SMc00689 at 2889.254 kb on + strand, within SMc00689 at 2889.254 kb on + strand, within SMc00689 at 2889.254 kb on + strand, within SMc00689 at 2889.254 kb on + strand, within SMc00689 at 2889.254 kb on + strand, within SMc00689 at 2889.254 kb on + strand, within SMc00689 at 2889.255 kb on - strand, within SMc00689
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 2,886,357 + -0.5 2,886,357 + -0.7 2,886,358 - -1.5 2,886,370 + -1.6 2,886,370 + +0.5 2,886,370 + +0.0 2,886,371 - +0.6 2,886,436 + +1.5 2,886,523 + SMc00691 0.19 +2.2 2,886,523 + SMc00691 0.19 +0.5 2,886,523 + SMc00691 0.19 +0.5 2,886,523 + SMc00691 0.19 -0.5 2,886,599 - SMc00691 0.27 +0.5 2,887,158 - SMc00691 0.86 +1.5 2,887,202 - -0.0 2,887,203 + +3.5 2,887,282 + +1.3 2,887,282 + +0.2 2,888,345 + +0.1 2,888,396 + -0.8 2,888,463 + -1.1 2,888,471 + +0.5 2,888,517 + -0.0 2,888,518 - -0.0 2,888,888 + SMc00689 0.24 +0.8 2,888,922 - SMc00689 0.26 +1.5 2,888,922 - SMc00689 0.26 +2.9 2,889,254 + SMc00689 0.49 -0.1 2,889,254 + SMc00689 0.49 +1.1 2,889,254 + SMc00689 0.49 +2.1 2,889,254 + SMc00689 0.49 +0.4 2,889,254 + SMc00689 0.49 +2.0 2,889,254 + SMc00689 0.49 -0.5 2,889,254 + SMc00689 0.49 +1.1 2,889,255 - SMc00689 0.49 -0.2
Or see this region's nucleotide sequence