Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00481 and SMc00480 are separated by 306 nucleotides SMc00480 and SMc00479 are separated by 109 nucleotides
SMc00481: SMc00481 - hypothetical protein, at 1,934,767 to 1,936,782
SMc00481
SMc00480: SMc00480 - isocitrate dehydrogenase, at 1,937,089 to 1,938,303
SMc00480
SMc00479: SMc00479 - transcriptional regulator, at 1,938,413 to 1,939,429
SMc00479
Position (kb)
1937
1938
1939 Strain fitness (log2 ratio)
-1
0
1
2 at 1936.364 kb on + strand, within SMc00481 at 1936.379 kb on + strand, within SMc00481 at 1936.379 kb on + strand, within SMc00481 at 1936.436 kb on + strand, within SMc00481 at 1936.611 kb on + strand at 1936.612 kb on - strand at 1936.626 kb on - strand at 1937.019 kb on + strand at 1937.019 kb on + strand at 1937.019 kb on + strand at 1937.021 kb on + strand at 1937.021 kb on + strand at 1938.512 kb on + strand at 1938.669 kb on + strand, within SMc00479 at 1938.669 kb on + strand, within SMc00479 at 1938.669 kb on + strand, within SMc00479 at 1938.669 kb on + strand, within SMc00479 at 1938.670 kb on - strand, within SMc00479 at 1938.733 kb on + strand, within SMc00479 at 1938.771 kb on - strand, within SMc00479 at 1938.771 kb on - strand, within SMc00479 at 1938.771 kb on - strand, within SMc00479 at 1938.784 kb on + strand, within SMc00479 at 1938.786 kb on + strand, within SMc00479 at 1938.803 kb on + strand, within SMc00479 at 1938.803 kb on + strand, within SMc00479 at 1938.804 kb on - strand, within SMc00479 at 1938.804 kb on - strand, within SMc00479 at 1938.954 kb on + strand, within SMc00479 at 1938.954 kb on + strand, within SMc00479 at 1938.955 kb on - strand, within SMc00479 at 1938.976 kb on - strand, within SMc00479 at 1939.032 kb on - strand, within SMc00479 at 1939.161 kb on - strand, within SMc00479 at 1939.177 kb on + strand, within SMc00479 at 1939.179 kb on + strand, within SMc00479 at 1939.179 kb on + strand, within SMc00479 at 1939.268 kb on + strand, within SMc00479 at 1939.269 kb on - strand, within SMc00479
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 1,936,364 + SMc00481 0.79 +0.0 1,936,379 + SMc00481 0.80 -0.5 1,936,379 + SMc00481 0.80 -0.1 1,936,436 + SMc00481 0.83 -1.1 1,936,611 + -0.3 1,936,612 - -0.5 1,936,626 - -0.4 1,937,019 + +0.0 1,937,019 + -0.0 1,937,019 + -0.6 1,937,021 + +0.5 1,937,021 + -0.4 1,938,512 + -0.7 1,938,669 + SMc00479 0.25 +0.3 1,938,669 + SMc00479 0.25 -0.2 1,938,669 + SMc00479 0.25 +0.3 1,938,669 + SMc00479 0.25 +0.6 1,938,670 - SMc00479 0.25 -0.5 1,938,733 + SMc00479 0.31 +0.6 1,938,771 - SMc00479 0.35 -0.4 1,938,771 - SMc00479 0.35 -1.4 1,938,771 - SMc00479 0.35 +1.3 1,938,784 + SMc00479 0.36 -0.5 1,938,786 + SMc00479 0.37 -0.2 1,938,803 + SMc00479 0.38 -0.1 1,938,803 + SMc00479 0.38 -0.5 1,938,804 - SMc00479 0.38 -0.7 1,938,804 - SMc00479 0.38 +2.0 1,938,954 + SMc00479 0.53 +0.1 1,938,954 + SMc00479 0.53 +1.2 1,938,955 - SMc00479 0.53 -0.2 1,938,976 - SMc00479 0.55 +0.4 1,939,032 - SMc00479 0.61 +2.0 1,939,161 - SMc00479 0.74 +1.1 1,939,177 + SMc00479 0.75 +0.2 1,939,179 + SMc00479 0.75 +0.5 1,939,179 + SMc00479 0.75 +1.6 1,939,268 + SMc00479 0.84 -0.7 1,939,269 - SMc00479 0.84 -0.3
Or see this region's nucleotide sequence