Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00300 and SMc00301 are separated by 213 nucleotides SMc00301 and SMc00302 are separated by 95 nucleotides SMc00302 and SMc00533 are separated by 10 nucleotides
SMc00300: SMc00300 - soluble pyridine nucleotide transhydrogenase, at 1,872,516 to 1,873,919
SMc00300
SMc00301: SMc00301 - hypothetical protein, at 1,874,133 to 1,874,525
SMc00301
SMc00302: SMc00302 - hypothetical protein, at 1,874,621 to 1,875,001
SMc00302
SMc00533: SMc00533 - pyridoxal-phosphate-dependent aminotransferase, at 1,875,012 to 1,876,256
SMc00533
Position (kb)
1874
1875
1876 Strain fitness (log2 ratio)
-2
-1
0
1 at 1873.746 kb on - strand, within SMc00300 at 1873.746 kb on - strand, within SMc00300 at 1873.746 kb on - strand, within SMc00300 at 1873.843 kb on - strand at 1873.863 kb on + strand at 1873.863 kb on + strand at 1873.863 kb on + strand at 1873.864 kb on - strand at 1873.864 kb on - strand at 1873.930 kb on - strand at 1873.938 kb on - strand at 1874.033 kb on - strand at 1874.069 kb on - strand at 1874.512 kb on - strand at 1874.525 kb on + strand at 1874.544 kb on - strand at 1874.583 kb on + strand at 1874.583 kb on + strand at 1874.583 kb on + strand at 1874.584 kb on - strand at 1874.584 kb on - strand at 1874.835 kb on + strand, within SMc00302 at 1874.836 kb on - strand, within SMc00302
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 1,873,746 - SMc00300 0.88 -0.6 1,873,746 - SMc00300 0.88 -1.6 1,873,746 - SMc00300 0.88 -0.0 1,873,843 - -0.0 1,873,863 + +0.1 1,873,863 + -0.8 1,873,863 + +0.6 1,873,864 - -0.7 1,873,864 - +0.7 1,873,930 - -0.1 1,873,938 - -1.2 1,874,033 - -0.2 1,874,069 - -0.2 1,874,512 - -0.6 1,874,525 + +0.2 1,874,544 - +0.3 1,874,583 + +0.0 1,874,583 + +0.3 1,874,583 + +0.6 1,874,584 - -0.1 1,874,584 - -0.5 1,874,835 + SMc00302 0.56 -1.6 1,874,836 - SMc00302 0.56 -1.8
Or see this region's nucleotide sequence