Strain Fitness in Sinorhizobium meliloti 1021 around SMc00017

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00016 and SMc00017 are separated by 154 nucleotidesSMc00017 and SMc00018 overlap by 4 nucleotidesSMc00018 and SMc00072 are separated by 210 nucleotides SMc00016: SMc00016 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 998,733 to 999,785 SMc00016 SMc00017: SMc00017 - homoserine kinase, at 999,940 to 1,000,920 SMc00017 SMc00018: SMc00018 - ribonuclease H, at 1,000,917 to 1,001,378 SMc00018 SMc00072: SMc00072 - peroxiredoxin protein, at 1,001,589 to 1,002,074 SMc00072 Position (kb) 999 1000 1001Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 999.792 kb on + strandat 999.792 kb on + strandat 999.869 kb on + strandat 999.869 kb on + strandat 999.894 kb on - strandat 999.915 kb on + strandat 999.915 kb on + strandat 999.916 kb on - strandat 999.916 kb on - strandat 1000.018 kb on + strandat 1000.081 kb on + strand, within SMc00017at 1000.083 kb on + strand, within SMc00017at 1000.888 kb on + strandat 1001.376 kb on + strandat 1001.377 kb on - strandat 1001.756 kb on + strand, within SMc00072

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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999,792 + +0.3
999,792 + +0.4
999,869 + +0.1
999,869 + -1.9
999,894 - -0.6
999,915 + +0.8
999,915 + -0.9
999,916 - -0.6
999,916 - +1.4
1,000,018 + -4.5
1,000,081 + SMc00017 0.14 -3.8
1,000,083 + SMc00017 0.15 -1.6
1,000,888 + -1.8
1,001,376 + -0.4
1,001,377 - +1.8
1,001,756 + SMc00072 0.34 -1.0

Or see this region's nucleotide sequence