Strain Fitness in Sinorhizobium meliloti 1021 around SMa0496

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0495 and SMa0496 are separated by 193 nucleotidesSMa0496 and SMa0498 are separated by 77 nucleotides SMa0495: SMa0495 - ABC transporter substrate-binding protein, at 269,299 to 270,117 SMa0495 SMa0496: SMa0496 - hypothetical protein, at 270,311 to 270,979 SMa0496 SMa0498: SMa0498 - LysR family transcriptional regulator, at 271,057 to 271,956 SMa0498 Position (kb) 270 271Strain fitness (log2 ratio) -1 0 1 2 3 4at 269.354 kb on + strandat 269.355 kb on - strandat 269.355 kb on - strandat 269.361 kb on + strandat 269.362 kb on - strandat 269.406 kb on + strand, within SMa0495at 269.612 kb on + strand, within SMa0495at 269.612 kb on + strand, within SMa0495at 269.612 kb on + strand, within SMa0495at 269.613 kb on - strand, within SMa0495at 269.660 kb on + strand, within SMa0495at 269.661 kb on - strand, within SMa0495at 269.961 kb on - strand, within SMa0495at 269.961 kb on - strand, within SMa0495at 270.005 kb on + strand, within SMa0495at 270.006 kb on - strand, within SMa0495at 270.006 kb on - strand, within SMa0495at 270.006 kb on - strand, within SMa0495at 270.006 kb on - strand, within SMa0495at 270.006 kb on - strand, within SMa0495at 270.076 kb on + strandat 270.173 kb on + strandat 270.241 kb on - strandat 270.346 kb on - strandat 270.396 kb on + strand, within SMa0496at 270.453 kb on - strand, within SMa0496at 270.453 kb on - strand, within SMa0496at 270.546 kb on - strand, within SMa0496at 270.636 kb on + strand, within SMa0496at 270.674 kb on - strand, within SMa0496at 270.674 kb on - strand, within SMa0496at 270.761 kb on + strand, within SMa0496at 270.761 kb on + strand, within SMa0496at 270.761 kb on + strand, within SMa0496at 270.762 kb on - strand, within SMa0496at 270.762 kb on - strand, within SMa0496at 270.884 kb on + strand, within SMa0496at 270.884 kb on + strand, within SMa0496at 270.885 kb on - strand, within SMa0496at 270.885 kb on - strand, within SMa0496at 270.888 kb on + strand, within SMa0496at 270.888 kb on + strand, within SMa0496at 270.888 kb on + strand, within SMa0496at 270.888 kb on + strand, within SMa0496at 270.888 kb on + strand, within SMa0496at 270.888 kb on + strand, within SMa0496at 270.888 kb on + strand, within SMa0496at 270.889 kb on - strand, within SMa0496at 270.889 kb on - strand, within SMa0496at 270.889 kb on - strand, within SMa0496at 270.889 kb on - strand, within SMa0496at 270.921 kb on + strandat 270.923 kb on + strandat 270.923 kb on + strandat 270.924 kb on - strandat 270.924 kb on - strandat 270.930 kb on - strandat 270.970 kb on + strandat 270.971 kb on - strandat 270.971 kb on - strandat 270.971 kb on - strandat 270.971 kb on - strandat 270.971 kb on - strandat 271.168 kb on + strand, within SMa0498at 271.168 kb on + strand, within SMa0498at 271.168 kb on + strand, within SMa0498at 271.195 kb on + strand, within SMa0498at 271.195 kb on + strand, within SMa0498at 271.195 kb on + strand, within SMa0498at 271.196 kb on - strand, within SMa0498at 271.246 kb on + strand, within SMa0498at 271.246 kb on + strand, within SMa0498at 271.247 kb on - strand, within SMa0498at 271.247 kb on - strand, within SMa0498at 271.247 kb on - strand, within SMa0498at 271.247 kb on - strand, within SMa0498at 271.396 kb on + strand, within SMa0498at 271.396 kb on + strand, within SMa0498at 271.525 kb on + strand, within SMa0498at 271.526 kb on - strand, within SMa0498at 271.526 kb on - strand, within SMa0498at 271.526 kb on - strand, within SMa0498at 271.527 kb on + strand, within SMa0498at 271.528 kb on - strand, within SMa0498at 271.752 kb on - strand, within SMa0498at 271.923 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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269,354 + -0.6
269,355 - -0.3
269,355 - +0.6
269,361 + +1.8
269,362 - +0.6
269,406 + SMa0495 0.13 -0.2
269,612 + SMa0495 0.38 -0.3
269,612 + SMa0495 0.38 +0.0
269,612 + SMa0495 0.38 +0.4
269,613 - SMa0495 0.38 +0.2
269,660 + SMa0495 0.44 -0.1
269,661 - SMa0495 0.44 +0.3
269,961 - SMa0495 0.81 -0.4
269,961 - SMa0495 0.81 -0.1
270,005 + SMa0495 0.86 +0.3
270,006 - SMa0495 0.86 +0.2
270,006 - SMa0495 0.86 +0.2
270,006 - SMa0495 0.86 -0.1
270,006 - SMa0495 0.86 +1.0
270,006 - SMa0495 0.86 -0.8
270,076 + -0.3
270,173 + +0.3
270,241 - +0.7
270,346 - +1.0
270,396 + SMa0496 0.13 +1.4
270,453 - SMa0496 0.21 +1.4
270,453 - SMa0496 0.21 +1.8
270,546 - SMa0496 0.35 +1.1
270,636 + SMa0496 0.49 +0.9
270,674 - SMa0496 0.54 +1.5
270,674 - SMa0496 0.54 +1.2
270,761 + SMa0496 0.67 +1.7
270,761 + SMa0496 0.67 +1.2
270,761 + SMa0496 0.67 +0.9
270,762 - SMa0496 0.67 +1.6
270,762 - SMa0496 0.67 +2.3
270,884 + SMa0496 0.86 +0.4
270,884 + SMa0496 0.86 +0.7
270,885 - SMa0496 0.86 +2.0
270,885 - SMa0496 0.86 +1.8
270,888 + SMa0496 0.86 +1.1
270,888 + SMa0496 0.86 +1.8
270,888 + SMa0496 0.86 +1.4
270,888 + SMa0496 0.86 -0.0
270,888 + SMa0496 0.86 +0.8
270,888 + SMa0496 0.86 +1.7
270,888 + SMa0496 0.86 +1.4
270,889 - SMa0496 0.86 +0.6
270,889 - SMa0496 0.86 +1.7
270,889 - SMa0496 0.86 +1.1
270,889 - SMa0496 0.86 +1.0
270,921 + +0.9
270,923 + +2.0
270,923 + +2.2
270,924 - +0.7
270,924 - +3.9
270,930 - -1.6
270,970 + +0.7
270,971 - -0.3
270,971 - +0.5
270,971 - +1.1
270,971 - +0.3
270,971 - +0.3
271,168 + SMa0498 0.12 -0.3
271,168 + SMa0498 0.12 +0.2
271,168 + SMa0498 0.12 -0.4
271,195 + SMa0498 0.15 -1.5
271,195 + SMa0498 0.15 -0.6
271,195 + SMa0498 0.15 +0.1
271,196 - SMa0498 0.15 -0.3
271,246 + SMa0498 0.21 -0.4
271,246 + SMa0498 0.21 -0.7
271,247 - SMa0498 0.21 -0.5
271,247 - SMa0498 0.21 +1.2
271,247 - SMa0498 0.21 +0.4
271,247 - SMa0498 0.21 +0.1
271,396 + SMa0498 0.38 -0.7
271,396 + SMa0498 0.38 -0.2
271,525 + SMa0498 0.52 -0.6
271,526 - SMa0498 0.52 -0.2
271,526 - SMa0498 0.52 -1.3
271,526 - SMa0498 0.52 -0.9
271,527 + SMa0498 0.52 +0.4
271,528 - SMa0498 0.52 -0.5
271,752 - SMa0498 0.77 -0.5
271,923 - -1.3

Or see this region's nucleotide sequence