Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0310 and SMa0312 are separated by 338 nucleotides SMa0312 and SMa0314 overlap by 4 nucleotides SMa0314 and SMa0316 are separated by 82 nucleotides
SMa0310: SMa0310 - hypothetical protein, at 174,273 to 175,004
SMa0310
SMa0312: SMa0312 - hypothetical protein, at 175,343 to 175,876
SMa0312
SMa0314: SMa0314 - hypothetical protein, at 175,873 to 176,124
SMa0314
SMa0316: SMa0316 - hypothetical protein, at 176,207 to 177,469
SMa0316
Position (kb) 175
176 Strain fitness (log2 ratio) -1
0
1
2 at 174.385 kb on + strand, within SMa0310 at 174.385 kb on + strand, within SMa0310 at 174.385 kb on + strand, within SMa0310 at 174.424 kb on + strand, within SMa0310 at 174.424 kb on + strand, within SMa0310 at 174.424 kb on + strand, within SMa0310 at 174.424 kb on + strand, within SMa0310 at 174.424 kb on + strand, within SMa0310 at 174.425 kb on - strand, within SMa0310 at 174.425 kb on - strand, within SMa0310 at 174.425 kb on - strand, within SMa0310 at 174.425 kb on - strand, within SMa0310 at 174.425 kb on - strand, within SMa0310 at 174.455 kb on + strand, within SMa0310 at 174.456 kb on - strand, within SMa0310 at 174.456 kb on - strand, within SMa0310 at 174.456 kb on - strand, within SMa0310 at 174.459 kb on - strand, within SMa0310 at 174.540 kb on + strand, within SMa0310 at 174.540 kb on + strand, within SMa0310 at 174.541 kb on - strand, within SMa0310 at 174.716 kb on + strand, within SMa0310 at 174.878 kb on + strand, within SMa0310 at 174.879 kb on - strand, within SMa0310 at 175.153 kb on + strand at 175.160 kb on - strand at 175.238 kb on - strand at 175.384 kb on + strand at 175.385 kb on - strand at 175.385 kb on - strand at 175.508 kb on + strand, within SMa0312 at 175.508 kb on + strand, within SMa0312 at 175.509 kb on - strand, within SMa0312 at 175.509 kb on - strand, within SMa0312 at 175.900 kb on + strand, within SMa0314 at 176.009 kb on - strand, within SMa0314 at 176.046 kb on + strand, within SMa0314 at 176.047 kb on - strand, within SMa0314 at 176.149 kb on - strand at 176.222 kb on - strand at 176.222 kb on - strand at 176.222 kb on - strand at 176.378 kb on + strand, within SMa0316 at 176.674 kb on + strand, within SMa0316 at 176.740 kb on + strand, within SMa0316 at 176.741 kb on - strand, within SMa0316 at 176.741 kb on - strand, within SMa0316 at 176.855 kb on - strand, within SMa0316 at 176.855 kb on - strand, within SMa0316
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 174,385 + SMa0310 0.15 +0.2 174,385 + SMa0310 0.15 +2.1 174,385 + SMa0310 0.15 -1.5 174,424 + SMa0310 0.21 -0.7 174,424 + SMa0310 0.21 -0.3 174,424 + SMa0310 0.21 +0.5 174,424 + SMa0310 0.21 +0.6 174,424 + SMa0310 0.21 -0.3 174,425 - SMa0310 0.21 -1.4 174,425 - SMa0310 0.21 -0.5 174,425 - SMa0310 0.21 +0.1 174,425 - SMa0310 0.21 -0.9 174,425 - SMa0310 0.21 +0.4 174,455 + SMa0310 0.25 +0.2 174,456 - SMa0310 0.25 +0.0 174,456 - SMa0310 0.25 +0.4 174,456 - SMa0310 0.25 -0.7 174,459 - SMa0310 0.25 +1.2 174,540 + SMa0310 0.36 -0.4 174,540 + SMa0310 0.36 -0.3 174,541 - SMa0310 0.37 +1.9 174,716 + SMa0310 0.61 -0.8 174,878 + SMa0310 0.83 -0.1 174,879 - SMa0310 0.83 +0.5 175,153 + +0.8 175,160 - -0.1 175,238 - -1.4 175,384 + -0.0 175,385 - +0.8 175,385 - -1.2 175,508 + SMa0312 0.31 +0.1 175,508 + SMa0312 0.31 +1.1 175,509 - SMa0312 0.31 +0.3 175,509 - SMa0312 0.31 +1.1 175,900 + SMa0314 0.11 -0.4 176,009 - SMa0314 0.54 -0.9 176,046 + SMa0314 0.69 -0.5 176,047 - SMa0314 0.69 -0.3 176,149 - -0.7 176,222 - -1.3 176,222 - -0.1 176,222 - -0.3 176,378 + SMa0316 0.14 +0.4 176,674 + SMa0316 0.37 +0.1 176,740 + SMa0316 0.42 -0.5 176,741 - SMa0316 0.42 +0.2 176,741 - SMa0316 0.42 +1.3 176,855 - SMa0316 0.51 -0.3 176,855 - SMa0316 0.51 -1.3
Or see this region's nucleotide sequence