Strain Fitness in Sinorhizobium meliloti 1021 around SMa0160

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0157 and SMa0160 are separated by 128 nucleotidesSMa0160 and SMa0162 are separated by 184 nucleotidesSMa0162 and SMa0163 overlap by 197 nucleotides SMa0157: SMa0157 - ABC transporter substrate-binding protein, at 87,283 to 88,287 SMa0157 SMa0160: SMa0160 - GntR family transcriptional regulator, at 88,416 to 89,090 SMa0160 SMa0162: SMa0162 - hypothetical protein, at 89,275 to 89,520 SMa0162 SMa0163: SMa0163 - PilQ2 pilus assembly protein, at 89,324 to 90,724 SMa0163 Position (kb) 88 89 90Strain fitness (log2 ratio) -2 -1 0 1 2at 87.431 kb on + strand, within SMa0157at 87.431 kb on + strand, within SMa0157at 87.432 kb on - strand, within SMa0157at 87.432 kb on - strand, within SMa0157at 87.432 kb on - strand, within SMa0157at 87.479 kb on + strand, within SMa0157at 87.480 kb on - strand, within SMa0157at 87.556 kb on + strand, within SMa0157at 87.572 kb on + strand, within SMa0157at 87.572 kb on + strand, within SMa0157at 87.572 kb on + strand, within SMa0157at 87.572 kb on + strand, within SMa0157at 87.573 kb on - strand, within SMa0157at 87.573 kb on - strand, within SMa0157at 87.573 kb on - strand, within SMa0157at 87.698 kb on + strand, within SMa0157at 87.895 kb on + strand, within SMa0157at 88.001 kb on + strand, within SMa0157at 88.001 kb on + strand, within SMa0157at 88.001 kb on + strand, within SMa0157at 88.330 kb on - strandat 88.434 kb on + strandat 88.469 kb on - strandat 88.532 kb on - strand, within SMa0160at 88.707 kb on - strand, within SMa0160at 88.789 kb on - strand, within SMa0160at 88.789 kb on - strand, within SMa0160at 88.789 kb on - strand, within SMa0160at 88.804 kb on + strand, within SMa0160at 88.804 kb on + strand, within SMa0160at 88.820 kb on - strand, within SMa0160at 88.822 kb on - strand, within SMa0160at 88.822 kb on - strand, within SMa0160at 88.977 kb on - strand, within SMa0160at 88.977 kb on - strand, within SMa0160at 89.044 kb on + strandat 89.045 kb on - strandat 89.088 kb on + strandat 89.122 kb on + strandat 89.123 kb on - strandat 89.128 kb on - strandat 89.128 kb on - strandat 89.137 kb on + strandat 89.195 kb on - strandat 89.195 kb on - strandat 89.270 kb on + strandat 89.270 kb on + strandat 89.271 kb on - strandat 89.570 kb on + strand, within SMa0163at 89.570 kb on + strand, within SMa0163at 89.571 kb on - strand, within SMa0163at 89.571 kb on - strand, within SMa0163at 89.571 kb on - strand, within SMa0163at 89.641 kb on + strand, within SMa0163at 89.649 kb on + strand, within SMa0163at 89.649 kb on + strand, within SMa0163at 89.649 kb on + strand, within SMa0163at 89.650 kb on - strand, within SMa0163at 89.650 kb on - strand, within SMa0163at 89.715 kb on + strand, within SMa0163at 89.716 kb on - strand, within SMa0163at 89.722 kb on - strand, within SMa0163at 89.780 kb on - strand, within SMa0163at 89.839 kb on + strand, within SMa0163at 89.840 kb on - strand, within SMa0163at 89.862 kb on + strand, within SMa0163at 89.862 kb on + strand, within SMa0163at 89.862 kb on + strand, within SMa0163at 89.936 kb on + strand, within SMa0163at 89.992 kb on + strand, within SMa0163at 90.036 kb on - strand, within SMa0163

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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87,431 + SMa0157 0.15 +0.2
87,431 + SMa0157 0.15 -0.3
87,432 - SMa0157 0.15 -0.4
87,432 - SMa0157 0.15 +0.9
87,432 - SMa0157 0.15 -0.6
87,479 + SMa0157 0.20 -0.9
87,480 - SMa0157 0.20 -2.1
87,556 + SMa0157 0.27 -0.5
87,572 + SMa0157 0.29 -0.5
87,572 + SMa0157 0.29 -0.1
87,572 + SMa0157 0.29 +0.4
87,572 + SMa0157 0.29 -2.4
87,573 - SMa0157 0.29 +0.1
87,573 - SMa0157 0.29 +1.1
87,573 - SMa0157 0.29 +0.2
87,698 + SMa0157 0.41 -0.3
87,895 + SMa0157 0.61 +0.1
88,001 + SMa0157 0.71 +0.2
88,001 + SMa0157 0.71 -0.5
88,001 + SMa0157 0.71 -0.3
88,330 - -0.0
88,434 + +0.2
88,469 - +0.4
88,532 - SMa0160 0.17 -0.5
88,707 - SMa0160 0.43 +0.3
88,789 - SMa0160 0.55 +0.4
88,789 - SMa0160 0.55 -0.0
88,789 - SMa0160 0.55 +0.5
88,804 + SMa0160 0.57 +1.7
88,804 + SMa0160 0.57 +0.6
88,820 - SMa0160 0.60 +0.1
88,822 - SMa0160 0.60 +0.5
88,822 - SMa0160 0.60 -0.0
88,977 - SMa0160 0.83 +2.2
88,977 - SMa0160 0.83 +0.5
89,044 + -1.3
89,045 - -0.7
89,088 + +0.0
89,122 + +0.4
89,123 - +0.8
89,128 - -0.7
89,128 - +0.7
89,137 + +0.9
89,195 - -0.7
89,195 - -0.1
89,270 + +1.7
89,270 + -0.3
89,271 - +0.4
89,570 + SMa0163 0.18 -0.3
89,570 + SMa0163 0.18 +0.3
89,571 - SMa0163 0.18 +1.1
89,571 - SMa0163 0.18 -1.2
89,571 - SMa0163 0.18 +1.1
89,641 + SMa0163 0.23 -0.8
89,649 + SMa0163 0.23 +0.4
89,649 + SMa0163 0.23 +0.1
89,649 + SMa0163 0.23 -0.8
89,650 - SMa0163 0.23 +0.2
89,650 - SMa0163 0.23 +0.4
89,715 + SMa0163 0.28 -1.0
89,716 - SMa0163 0.28 +0.5
89,722 - SMa0163 0.28 -0.3
89,780 - SMa0163 0.33 +0.8
89,839 + SMa0163 0.37 -0.6
89,840 - SMa0163 0.37 +0.3
89,862 + SMa0163 0.38 -0.9
89,862 + SMa0163 0.38 +0.5
89,862 + SMa0163 0.38 -0.1
89,936 + SMa0163 0.44 -1.7
89,992 + SMa0163 0.48 -0.5
90,036 - SMa0163 0.51 +0.5

Or see this region's nucleotide sequence