Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21087 and SM_b21088 are separated by 323 nucleotides SM_b21088 and SM_b21089 are separated by 162 nucleotides SM_b21089 and SM_b21090 are separated by 85 nucleotides
SM_b21087: SM_b21087 - conjugal transfer protein, at 725,979 to 730,598
_b21087
SM_b21088: SM_b21088 - hypothetical protein, at 730,922 to 731,137
_b21088
SM_b21089: SM_b21089 - membrane-anchored racemase, at 731,300 to 732,370
_b21089
SM_b21090: SM_b21090 - hypothetical protein, at 732,456 to 733,592
_b21090
Position (kb) 731
732
733 Strain fitness (log2 ratio) -2
-1
0
1
2 at 730.571 kb on + strand at 730.589 kb on + strand at 730.590 kb on - strand at 730.590 kb on - strand at 730.596 kb on + strand at 730.597 kb on - strand at 730.597 kb on - strand at 730.597 kb on - strand at 730.677 kb on - strand at 730.784 kb on + strand at 730.784 kb on + strand at 730.785 kb on - strand at 730.912 kb on + strand at 730.912 kb on + strand at 730.913 kb on - strand at 730.938 kb on - strand at 730.998 kb on + strand, within SM_b21088 at 730.999 kb on - strand, within SM_b21088 at 730.999 kb on - strand, within SM_b21088 at 730.999 kb on - strand, within SM_b21088 at 730.999 kb on - strand, within SM_b21088 at 731.015 kb on + strand, within SM_b21088 at 731.015 kb on + strand, within SM_b21088 at 731.015 kb on + strand, within SM_b21088 at 731.106 kb on + strand, within SM_b21088 at 731.141 kb on + strand at 731.141 kb on + strand at 731.142 kb on - strand at 731.142 kb on - strand at 731.155 kb on - strand at 731.291 kb on + strand at 731.291 kb on + strand at 731.291 kb on + strand at 731.292 kb on - strand at 731.295 kb on + strand at 731.296 kb on - strand at 731.296 kb on - strand at 731.296 kb on - strand at 731.296 kb on - strand at 731.372 kb on + strand at 731.373 kb on - strand at 731.532 kb on + strand, within SM_b21089 at 731.594 kb on - strand, within SM_b21089 at 731.594 kb on - strand, within SM_b21089 at 731.631 kb on + strand, within SM_b21089 at 731.632 kb on - strand, within SM_b21089 at 731.642 kb on + strand, within SM_b21089 at 731.678 kb on + strand, within SM_b21089 at 731.679 kb on - strand, within SM_b21089 at 731.679 kb on - strand, within SM_b21089 at 731.679 kb on - strand, within SM_b21089 at 731.696 kb on + strand, within SM_b21089 at 731.884 kb on - strand, within SM_b21089 at 731.949 kb on + strand, within SM_b21089 at 731.949 kb on + strand, within SM_b21089 at 731.950 kb on - strand, within SM_b21089 at 731.950 kb on - strand, within SM_b21089 at 732.018 kb on - strand, within SM_b21089 at 732.033 kb on - strand, within SM_b21089 at 732.041 kb on + strand, within SM_b21089 at 732.042 kb on - strand, within SM_b21089 at 732.042 kb on - strand, within SM_b21089 at 732.129 kb on - strand, within SM_b21089 at 732.621 kb on + strand, within SM_b21090 at 732.621 kb on + strand, within SM_b21090 at 732.621 kb on + strand, within SM_b21090 at 732.621 kb on + strand, within SM_b21090 at 732.622 kb on - strand, within SM_b21090 at 732.759 kb on + strand, within SM_b21090 at 732.930 kb on + strand, within SM_b21090 at 732.930 kb on + strand, within SM_b21090 at 733.134 kb on + strand, within SM_b21090 at 733.134 kb on + strand, within SM_b21090 at 733.134 kb on + strand, within SM_b21090 at 733.134 kb on + strand, within SM_b21090 at 733.135 kb on - strand, within SM_b21090 at 733.141 kb on - strand, within SM_b21090 at 733.150 kb on - strand, within SM_b21090 at 733.250 kb on - strand, within SM_b21090
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 730,571 + +0.2 730,589 + +0.1 730,590 - +2.1 730,590 - -0.2 730,596 + -0.1 730,597 - -1.1 730,597 - -0.4 730,597 - +1.0 730,677 - -0.2 730,784 + -0.3 730,784 + -0.1 730,785 - -0.4 730,912 + +0.6 730,912 + +0.3 730,913 - +1.3 730,938 - -0.3 730,998 + SM_b21088 0.35 -0.3 730,999 - SM_b21088 0.36 +0.3 730,999 - SM_b21088 0.36 -1.3 730,999 - SM_b21088 0.36 -0.4 730,999 - SM_b21088 0.36 -0.3 731,015 + SM_b21088 0.43 +0.6 731,015 + SM_b21088 0.43 -2.1 731,015 + SM_b21088 0.43 +0.2 731,106 + SM_b21088 0.85 -0.4 731,141 + -0.5 731,141 + -0.0 731,142 - -0.3 731,142 - +0.5 731,155 - +0.1 731,291 + -0.7 731,291 + +0.0 731,291 + +0.7 731,292 - -0.3 731,295 + -0.7 731,296 - -0.4 731,296 - -0.5 731,296 - -0.3 731,296 - -0.6 731,372 + +0.7 731,373 - +0.5 731,532 + SM_b21089 0.22 -0.1 731,594 - SM_b21089 0.27 +0.1 731,594 - SM_b21089 0.27 +0.3 731,631 + SM_b21089 0.31 -0.3 731,632 - SM_b21089 0.31 -0.3 731,642 + SM_b21089 0.32 +0.1 731,678 + SM_b21089 0.35 +0.5 731,679 - SM_b21089 0.35 +0.8 731,679 - SM_b21089 0.35 +0.4 731,679 - SM_b21089 0.35 +0.6 731,696 + SM_b21089 0.37 +0.1 731,884 - SM_b21089 0.55 -0.2 731,949 + SM_b21089 0.61 -1.5 731,949 + SM_b21089 0.61 -1.4 731,950 - SM_b21089 0.61 -1.0 731,950 - SM_b21089 0.61 -0.1 732,018 - SM_b21089 0.67 +0.2 732,033 - SM_b21089 0.68 -0.3 732,041 + SM_b21089 0.69 +2.2 732,042 - SM_b21089 0.69 -0.3 732,042 - SM_b21089 0.69 +0.8 732,129 - SM_b21089 0.77 -0.3 732,621 + SM_b21090 0.15 -0.7 732,621 + SM_b21090 0.15 +0.1 732,621 + SM_b21090 0.15 +0.2 732,621 + SM_b21090 0.15 -0.1 732,622 - SM_b21090 0.15 -1.4 732,759 + SM_b21090 0.27 -0.7 732,930 + SM_b21090 0.42 +0.5 732,930 + SM_b21090 0.42 +0.0 733,134 + SM_b21090 0.60 +0.3 733,134 + SM_b21090 0.60 -1.1 733,134 + SM_b21090 0.60 +0.5 733,134 + SM_b21090 0.60 -0.3 733,135 - SM_b21090 0.60 +0.8 733,141 - SM_b21090 0.60 -0.9 733,150 - SM_b21090 0.61 -0.3 733,250 - SM_b21090 0.70 +1.3
Or see this region's nucleotide sequence