Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20597

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20596 and SM_b20597 are separated by 327 nucleotidesSM_b20597 and SM_b20598 are separated by 155 nucleotides SM_b20596: SM_b20596 - hypothetical protein, at 1,609,604 to 1,610,593 _b20596 SM_b20597: SM_b20597 - hypothetical protein, at 1,610,921 to 1,611,340 _b20597 SM_b20598: SM_b20598 - replication protein, at 1,611,496 to 1,612,752 _b20598 Position (kb) 1610 1611 1612Strain fitness (log2 ratio) -1 0 1at 1610.395 kb on - strand, within SM_b20596at 1610.827 kb on + strandat 1610.827 kb on + strandat 1610.989 kb on + strand, within SM_b20597at 1610.989 kb on + strand, within SM_b20597at 1610.989 kb on + strand, within SM_b20597at 1610.990 kb on - strand, within SM_b20597at 1611.078 kb on - strand, within SM_b20597

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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1,610,395 - SM_b20596 0.80 +0.9
1,610,827 + -0.1
1,610,827 + -0.7
1,610,989 + SM_b20597 0.16 -0.5
1,610,989 + SM_b20597 0.16 -1.1
1,610,989 + SM_b20597 0.16 -0.7
1,610,990 - SM_b20597 0.16 -0.3
1,611,078 - SM_b20597 0.37 +0.3

Or see this region's nucleotide sequence