Experiment: diet=StandardDiet2; sample=FecalPellet; mouse16; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS17795 and BBR_RS17800 are separated by 39 nucleotides BBR_RS17800 and BBR_RS17805 overlap by 1 nucleotides BBR_RS17805 and BBR_RS17810 overlap by 4 nucleotides BBR_RS17810 and BBR_RS17815 are separated by 123 nucleotides
BBR_RS17795: BBR_RS17795 - MFS transporter, at 1,772,687 to 1,774,132
_RS17795
BBR_RS17800: BBR_RS17800 - ribokinase, at 1,774,172 to 1,775,074
_RS17800
BBR_RS17805: BBR_RS17805 - NADH-dependent alcohol dehydrogenase, at 1,775,074 to 1,776,279
_RS17805
BBR_RS17810: BBR_RS17810 - HAD family hydrolase, at 1,776,276 to 1,776,962
_RS17810
BBR_RS17815: BBR_RS17815 - nucleoside hydrolase, at 1,777,086 to 1,778,069
_RS17815
Position (kb) 1775
1776
1777 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1774.077 kb on - strand at 1774.077 kb on - strand at 1774.077 kb on - strand at 1774.090 kb on - strand at 1774.096 kb on - strand at 1774.109 kb on + strand at 1774.158 kb on - strand at 1774.189 kb on - strand at 1774.206 kb on - strand at 1774.239 kb on + strand at 1774.239 kb on + strand at 1774.247 kb on - strand at 1774.256 kb on + strand at 1774.257 kb on + strand at 1774.265 kb on - strand, within BBR_RS17800 at 1774.282 kb on + strand, within BBR_RS17800 at 1774.282 kb on + strand, within BBR_RS17800 at 1774.297 kb on - strand, within BBR_RS17800 at 1774.315 kb on - strand, within BBR_RS17800 at 1774.383 kb on - strand, within BBR_RS17800 at 1774.393 kb on - strand, within BBR_RS17800 at 1774.444 kb on - strand, within BBR_RS17800 at 1774.449 kb on - strand, within BBR_RS17800 at 1774.449 kb on - strand, within BBR_RS17800 at 1774.450 kb on - strand, within BBR_RS17800 at 1774.476 kb on + strand, within BBR_RS17800 at 1774.476 kb on + strand, within BBR_RS17800 at 1774.481 kb on + strand, within BBR_RS17800 at 1774.489 kb on - strand, within BBR_RS17800 at 1774.489 kb on - strand, within BBR_RS17800 at 1774.509 kb on + strand, within BBR_RS17800 at 1774.509 kb on + strand, within BBR_RS17800 at 1774.530 kb on + strand, within BBR_RS17800 at 1774.538 kb on - strand, within BBR_RS17800 at 1774.540 kb on + strand, within BBR_RS17800 at 1774.644 kb on + strand, within BBR_RS17800 at 1774.644 kb on + strand, within BBR_RS17800 at 1774.644 kb on + strand, within BBR_RS17800 at 1774.644 kb on + strand, within BBR_RS17800 at 1774.644 kb on + strand, within BBR_RS17800 at 1774.644 kb on + strand, within BBR_RS17800 at 1774.644 kb on + strand, within BBR_RS17800 at 1774.644 kb on + strand, within BBR_RS17800 at 1774.646 kb on + strand, within BBR_RS17800 at 1774.646 kb on + strand, within BBR_RS17800 at 1774.646 kb on + strand, within BBR_RS17800 at 1774.652 kb on - strand, within BBR_RS17800 at 1774.652 kb on - strand, within BBR_RS17800 at 1774.652 kb on - strand, within BBR_RS17800 at 1774.683 kb on + strand, within BBR_RS17800 at 1774.693 kb on + strand, within BBR_RS17800 at 1774.754 kb on + strand, within BBR_RS17800 at 1774.759 kb on + strand, within BBR_RS17800 at 1774.760 kb on - strand, within BBR_RS17800 at 1774.762 kb on - strand, within BBR_RS17800 at 1774.762 kb on - strand, within BBR_RS17800 at 1774.767 kb on - strand, within BBR_RS17800 at 1774.767 kb on - strand, within BBR_RS17800 at 1774.767 kb on - strand, within BBR_RS17800 at 1774.796 kb on - strand, within BBR_RS17800 at 1774.838 kb on + strand, within BBR_RS17800 at 1774.910 kb on + strand, within BBR_RS17800 at 1774.913 kb on - strand, within BBR_RS17800 at 1774.918 kb on - strand, within BBR_RS17800 at 1774.918 kb on - strand, within BBR_RS17800 at 1774.918 kb on - strand, within BBR_RS17800 at 1774.933 kb on - strand, within BBR_RS17800 at 1774.986 kb on + strand at 1775.005 kb on - strand at 1775.020 kb on + strand at 1775.020 kb on + strand at 1775.020 kb on + strand at 1775.082 kb on + strand at 1775.092 kb on + strand at 1775.098 kb on - strand at 1775.102 kb on + strand at 1775.102 kb on + strand at 1775.110 kb on - strand at 1775.114 kb on - strand at 1775.168 kb on - strand at 1775.272 kb on - strand, within BBR_RS17805 at 1775.304 kb on + strand, within BBR_RS17805 at 1775.327 kb on + strand, within BBR_RS17805 at 1775.327 kb on + strand, within BBR_RS17805 at 1775.351 kb on - strand, within BBR_RS17805 at 1775.368 kb on + strand, within BBR_RS17805 at 1775.377 kb on + strand, within BBR_RS17805 at 1775.395 kb on + strand, within BBR_RS17805 at 1775.421 kb on + strand, within BBR_RS17805 at 1775.421 kb on + strand, within BBR_RS17805 at 1775.438 kb on + strand, within BBR_RS17805 at 1775.446 kb on - strand, within BBR_RS17805 at 1775.448 kb on - strand, within BBR_RS17805 at 1775.448 kb on - strand, within BBR_RS17805 at 1775.475 kb on + strand, within BBR_RS17805 at 1775.480 kb on + strand, within BBR_RS17805 at 1775.483 kb on - strand, within BBR_RS17805 at 1775.488 kb on - strand, within BBR_RS17805 at 1775.488 kb on - strand, within BBR_RS17805 at 1775.488 kb on - strand, within BBR_RS17805 at 1775.493 kb on - strand, within BBR_RS17805 at 1775.498 kb on - strand, within BBR_RS17805 at 1775.518 kb on - strand, within BBR_RS17805 at 1775.523 kb on - strand, within BBR_RS17805 at 1775.528 kb on - strand, within BBR_RS17805 at 1775.531 kb on - strand, within BBR_RS17805 at 1775.550 kb on - strand, within BBR_RS17805 at 1775.578 kb on - strand, within BBR_RS17805 at 1775.606 kb on - strand, within BBR_RS17805 at 1775.624 kb on + strand, within BBR_RS17805 at 1775.694 kb on - strand, within BBR_RS17805 at 1775.709 kb on - strand, within BBR_RS17805 at 1775.727 kb on - strand, within BBR_RS17805 at 1775.731 kb on - strand, within BBR_RS17805 at 1775.735 kb on - strand, within BBR_RS17805 at 1775.778 kb on - strand, within BBR_RS17805 at 1775.783 kb on - strand, within BBR_RS17805 at 1775.800 kb on - strand, within BBR_RS17805 at 1775.863 kb on + strand, within BBR_RS17805 at 1775.863 kb on - strand, within BBR_RS17805 at 1775.934 kb on + strand, within BBR_RS17805 at 1775.942 kb on - strand, within BBR_RS17805 at 1775.947 kb on - strand, within BBR_RS17805 at 1775.967 kb on + strand, within BBR_RS17805 at 1775.992 kb on + strand, within BBR_RS17805 at 1776.009 kb on - strand, within BBR_RS17805 at 1776.028 kb on + strand, within BBR_RS17805 at 1776.043 kb on + strand, within BBR_RS17805 at 1776.074 kb on + strand, within BBR_RS17805 at 1776.082 kb on - strand, within BBR_RS17805 at 1776.082 kb on - strand, within BBR_RS17805 at 1776.103 kb on - strand, within BBR_RS17805 at 1776.105 kb on + strand, within BBR_RS17805 at 1776.105 kb on + strand, within BBR_RS17805 at 1776.113 kb on - strand, within BBR_RS17805 at 1776.113 kb on - strand, within BBR_RS17805 at 1776.113 kb on - strand, within BBR_RS17805 at 1776.113 kb on - strand, within BBR_RS17805 at 1776.113 kb on - strand, within BBR_RS17805 at 1776.133 kb on - strand, within BBR_RS17805 at 1776.169 kb on - strand at 1776.169 kb on - strand at 1776.224 kb on - strand at 1776.259 kb on - strand at 1776.280 kb on + strand at 1776.280 kb on + strand at 1776.281 kb on - strand at 1776.281 kb on - strand at 1776.286 kb on + strand at 1776.304 kb on - strand at 1776.304 kb on - strand at 1776.361 kb on + strand, within BBR_RS17810 at 1776.369 kb on - strand, within BBR_RS17810 at 1776.426 kb on - strand, within BBR_RS17810 at 1776.443 kb on + strand, within BBR_RS17810 at 1776.463 kb on - strand, within BBR_RS17810 at 1776.463 kb on - strand, within BBR_RS17810 at 1776.465 kb on + strand, within BBR_RS17810 at 1776.476 kb on - strand, within BBR_RS17810 at 1776.492 kb on - strand, within BBR_RS17810 at 1776.492 kb on - strand, within BBR_RS17810 at 1776.502 kb on + strand, within BBR_RS17810 at 1776.576 kb on - strand, within BBR_RS17810 at 1776.583 kb on - strand, within BBR_RS17810 at 1776.583 kb on - strand, within BBR_RS17810 at 1776.699 kb on - strand, within BBR_RS17810 at 1776.729 kb on + strand, within BBR_RS17810 at 1776.743 kb on - strand, within BBR_RS17810 at 1776.747 kb on - strand, within BBR_RS17810 at 1776.749 kb on + strand, within BBR_RS17810 at 1776.773 kb on + strand, within BBR_RS17810 at 1776.814 kb on - strand, within BBR_RS17810 at 1776.912 kb on - strand at 1776.917 kb on + strand at 1776.923 kb on - strand at 1776.925 kb on - strand at 1776.972 kb on - strand at 1776.973 kb on - strand at 1777.079 kb on - strand at 1777.082 kb on + strand at 1777.169 kb on - strand at 1777.206 kb on + strand, within BBR_RS17815 at 1777.211 kb on + strand, within BBR_RS17815 at 1777.232 kb on + strand, within BBR_RS17815 at 1777.258 kb on - strand, within BBR_RS17815 at 1777.258 kb on - strand, within BBR_RS17815 at 1777.275 kb on + strand, within BBR_RS17815
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet2; sample=FecalPellet; mouse16; day4 remove 1,774,077 - -1.7 1,774,077 - -2.2 1,774,077 - -0.3 1,774,090 - -0.7 1,774,096 - -2.1 1,774,109 + +0.2 1,774,158 - -1.3 1,774,189 - -0.9 1,774,206 - +1.1 1,774,239 + -0.5 1,774,239 + +0.3 1,774,247 - +0.9 1,774,256 + +1.1 1,774,257 + -2.0 1,774,265 - BBR_RS17800 0.10 +0.3 1,774,282 + BBR_RS17800 0.12 -0.3 1,774,282 + BBR_RS17800 0.12 -0.3 1,774,297 - BBR_RS17800 0.14 -2.0 1,774,315 - BBR_RS17800 0.16 +0.3 1,774,383 - BBR_RS17800 0.23 +1.1 1,774,393 - BBR_RS17800 0.24 -2.1 1,774,444 - BBR_RS17800 0.30 -0.0 1,774,449 - BBR_RS17800 0.31 -0.8 1,774,449 - BBR_RS17800 0.31 +0.0 1,774,450 - BBR_RS17800 0.31 +0.7 1,774,476 + BBR_RS17800 0.34 +1.3 1,774,476 + BBR_RS17800 0.34 -2.2 1,774,481 + BBR_RS17800 0.34 +0.5 1,774,489 - BBR_RS17800 0.35 -0.6 1,774,489 - BBR_RS17800 0.35 -0.2 1,774,509 + BBR_RS17800 0.37 -1.3 1,774,509 + BBR_RS17800 0.37 +0.6 1,774,530 + BBR_RS17800 0.40 -0.5 1,774,538 - BBR_RS17800 0.41 -1.9 1,774,540 + BBR_RS17800 0.41 +0.7 1,774,644 + BBR_RS17800 0.52 +1.1 1,774,644 + BBR_RS17800 0.52 -2.1 1,774,644 + BBR_RS17800 0.52 +1.0 1,774,644 + BBR_RS17800 0.52 -0.4 1,774,644 + BBR_RS17800 0.52 +0.7 1,774,644 + BBR_RS17800 0.52 -2.7 1,774,644 + BBR_RS17800 0.52 -1.3 1,774,644 + BBR_RS17800 0.52 +1.7 1,774,646 + BBR_RS17800 0.52 +0.0 1,774,646 + BBR_RS17800 0.52 -2.1 1,774,646 + BBR_RS17800 0.52 -0.8 1,774,652 - BBR_RS17800 0.53 +0.2 1,774,652 - BBR_RS17800 0.53 -0.0 1,774,652 - BBR_RS17800 0.53 -2.1 1,774,683 + BBR_RS17800 0.57 +2.2 1,774,693 + BBR_RS17800 0.58 -0.9 1,774,754 + BBR_RS17800 0.64 +0.7 1,774,759 + BBR_RS17800 0.65 +4.7 1,774,760 - BBR_RS17800 0.65 -0.8 1,774,762 - BBR_RS17800 0.65 +0.8 1,774,762 - BBR_RS17800 0.65 +1.3 1,774,767 - BBR_RS17800 0.66 -0.1 1,774,767 - BBR_RS17800 0.66 -0.0 1,774,767 - BBR_RS17800 0.66 +0.4 1,774,796 - BBR_RS17800 0.69 -3.2 1,774,838 + BBR_RS17800 0.74 -0.8 1,774,910 + BBR_RS17800 0.82 +2.4 1,774,913 - BBR_RS17800 0.82 -1.9 1,774,918 - BBR_RS17800 0.83 -3.0 1,774,918 - BBR_RS17800 0.83 -0.1 1,774,918 - BBR_RS17800 0.83 -2.5 1,774,933 - BBR_RS17800 0.84 -1.8 1,774,986 + -1.6 1,775,005 - -2.5 1,775,020 + -0.0 1,775,020 + +1.3 1,775,020 + +1.1 1,775,082 + +0.3 1,775,092 + -1.8 1,775,098 - +1.7 1,775,102 + +0.5 1,775,102 + +0.0 1,775,110 - +0.3 1,775,114 - -1.3 1,775,168 - +0.7 1,775,272 - BBR_RS17805 0.16 -2.1 1,775,304 + BBR_RS17805 0.19 -0.3 1,775,327 + BBR_RS17805 0.21 +1.1 1,775,327 + BBR_RS17805 0.21 -0.7 1,775,351 - BBR_RS17805 0.23 -1.4 1,775,368 + BBR_RS17805 0.24 +0.1 1,775,377 + BBR_RS17805 0.25 -0.9 1,775,395 + BBR_RS17805 0.27 -0.1 1,775,421 + BBR_RS17805 0.29 +1.3 1,775,421 + BBR_RS17805 0.29 +0.9 1,775,438 + BBR_RS17805 0.30 +0.3 1,775,446 - BBR_RS17805 0.31 -0.0 1,775,448 - BBR_RS17805 0.31 -0.6 1,775,448 - BBR_RS17805 0.31 -1.4 1,775,475 + BBR_RS17805 0.33 -2.4 1,775,480 + BBR_RS17805 0.34 -1.3 1,775,483 - BBR_RS17805 0.34 -0.1 1,775,488 - BBR_RS17805 0.34 -2.2 1,775,488 - BBR_RS17805 0.34 -1.6 1,775,488 - BBR_RS17805 0.34 +2.0 1,775,493 - BBR_RS17805 0.35 -0.7 1,775,498 - BBR_RS17805 0.35 -1.9 1,775,518 - BBR_RS17805 0.37 +0.4 1,775,523 - BBR_RS17805 0.37 +0.1 1,775,528 - BBR_RS17805 0.38 +2.2 1,775,531 - BBR_RS17805 0.38 -0.0 1,775,550 - BBR_RS17805 0.39 +0.4 1,775,578 - BBR_RS17805 0.42 +2.3 1,775,606 - BBR_RS17805 0.44 +0.7 1,775,624 + BBR_RS17805 0.46 -0.9 1,775,694 - BBR_RS17805 0.51 -2.2 1,775,709 - BBR_RS17805 0.53 +1.4 1,775,727 - BBR_RS17805 0.54 +1.1 1,775,731 - BBR_RS17805 0.54 -0.1 1,775,735 - BBR_RS17805 0.55 +0.3 1,775,778 - BBR_RS17805 0.58 -1.9 1,775,783 - BBR_RS17805 0.59 -1.1 1,775,800 - BBR_RS17805 0.60 +0.3 1,775,863 + BBR_RS17805 0.65 -0.5 1,775,863 - BBR_RS17805 0.65 +2.1 1,775,934 + BBR_RS17805 0.71 +0.9 1,775,942 - BBR_RS17805 0.72 -0.9 1,775,947 - BBR_RS17805 0.72 +2.0 1,775,967 + BBR_RS17805 0.74 +0.2 1,775,992 + BBR_RS17805 0.76 -0.1 1,776,009 - BBR_RS17805 0.78 -1.9 1,776,028 + BBR_RS17805 0.79 +1.2 1,776,043 + BBR_RS17805 0.80 -0.6 1,776,074 + BBR_RS17805 0.83 -0.9 1,776,082 - BBR_RS17805 0.84 +2.7 1,776,082 - BBR_RS17805 0.84 +1.4 1,776,103 - BBR_RS17805 0.85 +0.1 1,776,105 + BBR_RS17805 0.85 -0.3 1,776,105 + BBR_RS17805 0.85 -0.4 1,776,113 - BBR_RS17805 0.86 +0.1 1,776,113 - BBR_RS17805 0.86 +1.1 1,776,113 - BBR_RS17805 0.86 +2.0 1,776,113 - BBR_RS17805 0.86 +0.6 1,776,113 - BBR_RS17805 0.86 +1.1 1,776,133 - BBR_RS17805 0.88 -0.6 1,776,169 - -2.1 1,776,169 - -2.5 1,776,224 - +0.1 1,776,259 - -0.6 1,776,280 + +0.8 1,776,280 + +0.2 1,776,281 - +0.1 1,776,281 - +0.4 1,776,286 + -2.2 1,776,304 - -0.6 1,776,304 - -0.9 1,776,361 + BBR_RS17810 0.12 +3.1 1,776,369 - BBR_RS17810 0.14 -0.1 1,776,426 - BBR_RS17810 0.22 +0.3 1,776,443 + BBR_RS17810 0.24 -0.2 1,776,463 - BBR_RS17810 0.27 +0.2 1,776,463 - BBR_RS17810 0.27 +1.4 1,776,465 + BBR_RS17810 0.28 -1.5 1,776,476 - BBR_RS17810 0.29 -2.6 1,776,492 - BBR_RS17810 0.31 -2.1 1,776,492 - BBR_RS17810 0.31 -2.2 1,776,502 + BBR_RS17810 0.33 -2.0 1,776,576 - BBR_RS17810 0.44 -0.9 1,776,583 - BBR_RS17810 0.45 +1.8 1,776,583 - BBR_RS17810 0.45 -0.1 1,776,699 - BBR_RS17810 0.62 -1.0 1,776,729 + BBR_RS17810 0.66 -2.2 1,776,743 - BBR_RS17810 0.68 -0.5 1,776,747 - BBR_RS17810 0.69 +0.1 1,776,749 + BBR_RS17810 0.69 -1.4 1,776,773 + BBR_RS17810 0.72 -2.9 1,776,814 - BBR_RS17810 0.78 -0.5 1,776,912 - -1.9 1,776,917 + +0.0 1,776,923 - -0.0 1,776,925 - +1.3 1,776,972 - -0.5 1,776,973 - +0.1 1,777,079 - -0.1 1,777,082 + -2.9 1,777,169 - -1.1 1,777,206 + BBR_RS17815 0.12 -0.4 1,777,211 + BBR_RS17815 0.13 -0.1 1,777,232 + BBR_RS17815 0.15 +0.6 1,777,258 - BBR_RS17815 0.17 -0.3 1,777,258 - BBR_RS17815 0.17 -1.6 1,777,275 + BBR_RS17815 0.19 -1.0
Or see this region's nucleotide sequence