Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13515

Experiment: diet=StandardDiet2; sample=FecalPellet; mouse16; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13505 and BBR_RS13510 are separated by 17 nucleotidesBBR_RS13510 and BBR_RS13515 are separated by 114 nucleotidesBBR_RS13515 and BBR_RS13520 are separated by 84 nucleotidesBBR_RS13520 and BBR_RS13525 are separated by 80 nucleotides BBR_RS13505: BBR_RS13505 - DUF4391 domain-containing protein, at 803,720 to 804,451 _RS13505 BBR_RS13510: BBR_RS13510 - LysR family transcriptional regulator, at 804,469 to 805,284 _RS13510 BBR_RS13515: BBR_RS13515 - putative sulfate exporter family transporter, at 805,399 to 806,463 _RS13515 BBR_RS13520: BBR_RS13520 - polysaccharide synthesis protein GtrA, at 806,548 to 807,035 _RS13520 BBR_RS13525: BBR_RS13525 - CrcB family protein, at 807,116 to 807,481 _RS13525 Position (kb) 805 806 807Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 804.439 kb on - strandat 804.446 kb on + strandat 804.446 kb on + strandat 804.446 kb on + strandat 804.446 kb on + strandat 804.446 kb on + strandat 804.446 kb on + strandat 804.446 kb on + strandat 804.454 kb on - strandat 804.454 kb on - strandat 804.459 kb on + strandat 804.467 kb on - strandat 804.488 kb on - strandat 804.499 kb on + strandat 804.506 kb on + strandat 804.509 kb on - strandat 804.516 kb on + strandat 804.516 kb on + strandat 804.596 kb on + strand, within BBR_RS13510at 804.599 kb on - strand, within BBR_RS13510at 804.630 kb on + strand, within BBR_RS13510at 804.653 kb on - strand, within BBR_RS13510at 804.783 kb on - strand, within BBR_RS13510at 804.876 kb on + strand, within BBR_RS13510at 804.876 kb on + strand, within BBR_RS13510at 804.884 kb on - strand, within BBR_RS13510at 804.889 kb on + strand, within BBR_RS13510at 804.935 kb on + strand, within BBR_RS13510at 804.935 kb on + strand, within BBR_RS13510at 804.935 kb on + strand, within BBR_RS13510at 804.943 kb on - strand, within BBR_RS13510at 804.943 kb on - strand, within BBR_RS13510at 804.943 kb on - strand, within BBR_RS13510at 804.954 kb on - strand, within BBR_RS13510at 804.956 kb on + strand, within BBR_RS13510at 804.991 kb on - strand, within BBR_RS13510at 805.007 kb on + strand, within BBR_RS13510at 805.007 kb on + strand, within BBR_RS13510at 805.028 kb on - strand, within BBR_RS13510at 805.056 kb on - strand, within BBR_RS13510at 805.061 kb on - strand, within BBR_RS13510at 805.078 kb on - strand, within BBR_RS13510at 805.080 kb on + strand, within BBR_RS13510at 805.126 kb on - strand, within BBR_RS13510at 805.126 kb on - strand, within BBR_RS13510at 805.152 kb on + strand, within BBR_RS13510at 805.152 kb on + strand, within BBR_RS13510at 805.154 kb on + strand, within BBR_RS13510at 805.162 kb on - strand, within BBR_RS13510at 805.228 kb on - strandat 805.309 kb on - strandat 805.441 kb on + strandat 805.603 kb on - strand, within BBR_RS13515at 805.613 kb on + strand, within BBR_RS13515at 805.667 kb on + strand, within BBR_RS13515at 805.700 kb on - strand, within BBR_RS13515at 805.702 kb on + strand, within BBR_RS13515at 805.716 kb on + strand, within BBR_RS13515at 805.716 kb on + strand, within BBR_RS13515at 805.770 kb on + strand, within BBR_RS13515at 805.775 kb on + strand, within BBR_RS13515at 805.778 kb on - strand, within BBR_RS13515at 805.791 kb on + strand, within BBR_RS13515at 805.804 kb on - strand, within BBR_RS13515at 805.824 kb on - strand, within BBR_RS13515at 805.824 kb on - strand, within BBR_RS13515at 805.824 kb on - strand, within BBR_RS13515at 805.864 kb on + strand, within BBR_RS13515at 805.872 kb on - strand, within BBR_RS13515at 805.931 kb on - strand, within BBR_RS13515at 805.956 kb on - strand, within BBR_RS13515at 805.969 kb on + strand, within BBR_RS13515at 805.969 kb on + strand, within BBR_RS13515at 806.016 kb on + strand, within BBR_RS13515at 806.027 kb on - strand, within BBR_RS13515at 806.027 kb on - strand, within BBR_RS13515at 806.078 kb on + strand, within BBR_RS13515at 806.092 kb on - strand, within BBR_RS13515at 806.120 kb on - strand, within BBR_RS13515at 806.177 kb on + strand, within BBR_RS13515at 806.182 kb on + strand, within BBR_RS13515at 806.187 kb on + strand, within BBR_RS13515at 806.242 kb on - strand, within BBR_RS13515at 806.253 kb on + strand, within BBR_RS13515at 806.309 kb on + strand, within BBR_RS13515at 806.324 kb on + strand, within BBR_RS13515at 806.336 kb on - strand, within BBR_RS13515at 806.336 kb on - strand, within BBR_RS13515at 806.336 kb on - strand, within BBR_RS13515at 806.336 kb on - strand, within BBR_RS13515at 806.336 kb on - strand, within BBR_RS13515at 806.358 kb on + strandat 806.358 kb on + strandat 806.387 kb on - strandat 806.403 kb on - strandat 806.449 kb on + strandat 806.449 kb on + strandat 806.449 kb on - strandat 806.465 kb on - strandat 806.465 kb on - strandat 806.495 kb on - strandat 806.497 kb on + strandat 806.530 kb on + strandat 806.538 kb on - strandat 806.539 kb on - strandat 806.564 kb on + strandat 806.606 kb on + strand, within BBR_RS13520at 806.748 kb on + strand, within BBR_RS13520at 806.767 kb on - strand, within BBR_RS13520at 806.767 kb on - strand, within BBR_RS13520at 806.797 kb on + strand, within BBR_RS13520at 806.821 kb on + strand, within BBR_RS13520at 806.858 kb on + strand, within BBR_RS13520at 806.866 kb on + strand, within BBR_RS13520at 806.874 kb on - strand, within BBR_RS13520at 806.874 kb on - strand, within BBR_RS13520at 806.875 kb on + strand, within BBR_RS13520at 806.876 kb on - strand, within BBR_RS13520at 806.876 kb on - strand, within BBR_RS13520at 806.878 kb on - strand, within BBR_RS13520at 806.892 kb on + strand, within BBR_RS13520at 806.902 kb on - strand, within BBR_RS13520at 807.004 kb on - strandat 807.006 kb on - strandat 807.032 kb on - strandat 807.045 kb on - strandat 807.114 kb on + strandat 807.164 kb on - strand, within BBR_RS13525at 807.164 kb on - strand, within BBR_RS13525at 807.169 kb on + strand, within BBR_RS13525at 807.186 kb on - strand, within BBR_RS13525at 807.189 kb on + strand, within BBR_RS13525at 807.201 kb on + strand, within BBR_RS13525at 807.234 kb on + strand, within BBR_RS13525at 807.253 kb on - strand, within BBR_RS13525at 807.269 kb on + strand, within BBR_RS13525at 807.409 kb on + strand, within BBR_RS13525

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet2; sample=FecalPellet; mouse16; day4
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804,439 - +0.7
804,446 + -1.9
804,446 + -0.9
804,446 + -0.5
804,446 + +1.8
804,446 + -3.3
804,446 + -0.2
804,446 + +0.2
804,454 - -1.3
804,454 - -1.1
804,459 + -0.9
804,467 - +1.1
804,488 - +0.2
804,499 + -1.0
804,506 + +0.1
804,509 - -0.0
804,516 + -1.1
804,516 + -0.1
804,596 + BBR_RS13510 0.16 -1.0
804,599 - BBR_RS13510 0.16 +0.4
804,630 + BBR_RS13510 0.20 -0.7
804,653 - BBR_RS13510 0.23 -1.3
804,783 - BBR_RS13510 0.38 -2.0
804,876 + BBR_RS13510 0.50 -1.3
804,876 + BBR_RS13510 0.50 +0.6
804,884 - BBR_RS13510 0.51 +1.8
804,889 + BBR_RS13510 0.51 -2.0
804,935 + BBR_RS13510 0.57 -0.3
804,935 + BBR_RS13510 0.57 +1.0
804,935 + BBR_RS13510 0.57 -1.1
804,943 - BBR_RS13510 0.58 +0.2
804,943 - BBR_RS13510 0.58 +1.0
804,943 - BBR_RS13510 0.58 +0.0
804,954 - BBR_RS13510 0.59 -2.2
804,956 + BBR_RS13510 0.60 -0.7
804,991 - BBR_RS13510 0.64 +1.1
805,007 + BBR_RS13510 0.66 -1.4
805,007 + BBR_RS13510 0.66 +0.2
805,028 - BBR_RS13510 0.69 -0.4
805,056 - BBR_RS13510 0.72 +0.7
805,061 - BBR_RS13510 0.73 +0.4
805,078 - BBR_RS13510 0.75 -0.4
805,080 + BBR_RS13510 0.75 -2.0
805,126 - BBR_RS13510 0.81 +0.4
805,126 - BBR_RS13510 0.81 -2.5
805,152 + BBR_RS13510 0.84 -0.5
805,152 + BBR_RS13510 0.84 +2.8
805,154 + BBR_RS13510 0.84 -1.3
805,162 - BBR_RS13510 0.85 +0.7
805,228 - -1.4
805,309 - -1.7
805,441 + -1.0
805,603 - BBR_RS13515 0.19 +0.7
805,613 + BBR_RS13515 0.20 -3.9
805,667 + BBR_RS13515 0.25 -0.5
805,700 - BBR_RS13515 0.28 -2.3
805,702 + BBR_RS13515 0.28 -2.4
805,716 + BBR_RS13515 0.30 -2.7
805,716 + BBR_RS13515 0.30 -1.3
805,770 + BBR_RS13515 0.35 -2.0
805,775 + BBR_RS13515 0.35 -1.4
805,778 - BBR_RS13515 0.36 -2.3
805,791 + BBR_RS13515 0.37 -3.0
805,804 - BBR_RS13515 0.38 -1.9
805,824 - BBR_RS13515 0.40 -2.1
805,824 - BBR_RS13515 0.40 -1.4
805,824 - BBR_RS13515 0.40 -1.6
805,864 + BBR_RS13515 0.44 -2.3
805,872 - BBR_RS13515 0.44 -2.9
805,931 - BBR_RS13515 0.50 -2.6
805,956 - BBR_RS13515 0.52 -1.2
805,969 + BBR_RS13515 0.54 +1.5
805,969 + BBR_RS13515 0.54 -1.2
806,016 + BBR_RS13515 0.58 -2.3
806,027 - BBR_RS13515 0.59 -1.9
806,027 - BBR_RS13515 0.59 -2.0
806,078 + BBR_RS13515 0.64 -2.4
806,092 - BBR_RS13515 0.65 -1.9
806,120 - BBR_RS13515 0.68 -1.0
806,177 + BBR_RS13515 0.73 -1.4
806,182 + BBR_RS13515 0.74 -1.7
806,187 + BBR_RS13515 0.74 -0.3
806,242 - BBR_RS13515 0.79 +0.6
806,253 + BBR_RS13515 0.80 -1.5
806,309 + BBR_RS13515 0.85 -2.2
806,324 + BBR_RS13515 0.87 -2.0
806,336 - BBR_RS13515 0.88 -2.6
806,336 - BBR_RS13515 0.88 -1.1
806,336 - BBR_RS13515 0.88 -0.2
806,336 - BBR_RS13515 0.88 +0.2
806,336 - BBR_RS13515 0.88 -1.4
806,358 + -1.0
806,358 + -1.2
806,387 - -3.1
806,403 - -0.7
806,449 + -1.8
806,449 + +0.2
806,449 - -2.2
806,465 - -1.2
806,465 - -0.3
806,495 - +1.4
806,497 + +0.6
806,530 + +1.1
806,538 - -0.2
806,539 - +1.1
806,564 + -2.0
806,606 + BBR_RS13520 0.12 +0.6
806,748 + BBR_RS13520 0.41 -1.2
806,767 - BBR_RS13520 0.45 -1.1
806,767 - BBR_RS13520 0.45 +1.1
806,797 + BBR_RS13520 0.51 -1.3
806,821 + BBR_RS13520 0.56 +0.1
806,858 + BBR_RS13520 0.64 -0.1
806,866 + BBR_RS13520 0.65 +0.3
806,874 - BBR_RS13520 0.67 +2.2
806,874 - BBR_RS13520 0.67 +3.1
806,875 + BBR_RS13520 0.67 -0.5
806,876 - BBR_RS13520 0.67 +0.7
806,876 - BBR_RS13520 0.67 -0.8
806,878 - BBR_RS13520 0.68 +1.9
806,892 + BBR_RS13520 0.70 -0.1
806,902 - BBR_RS13520 0.73 -0.8
807,004 - +0.6
807,006 - +2.4
807,032 - +0.5
807,045 - +0.5
807,114 + -1.0
807,164 - BBR_RS13525 0.13 +1.4
807,164 - BBR_RS13525 0.13 -1.4
807,169 + BBR_RS13525 0.14 -0.7
807,186 - BBR_RS13525 0.19 +0.4
807,189 + BBR_RS13525 0.20 +0.4
807,201 + BBR_RS13525 0.23 +1.4
807,234 + BBR_RS13525 0.32 +1.0
807,253 - BBR_RS13525 0.37 -1.8
807,269 + BBR_RS13525 0.42 +1.1
807,409 + BBR_RS13525 0.80 -1.7

Or see this region's nucleotide sequence