Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13100

Experiment: diet=StandardDiet2; sample=FecalPellet; mouse16; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13095 and BBR_RS13100 are separated by 255 nucleotidesBBR_RS13100 and BBR_RS13105 are separated by 162 nucleotides BBR_RS13095: BBR_RS13095 - beta-galactosidase, at 711,197 to 713,272 _RS13095 BBR_RS13100: BBR_RS13100 - sugar ABC transporter substrate-binding protein, at 713,528 to 714,874 _RS13100 BBR_RS13105: BBR_RS13105 - sugar ABC transporter substrate-binding protein, at 715,037 to 716,458 _RS13105 Position (kb) 713 714 715Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 712.558 kb on + strand, within BBR_RS13095at 712.588 kb on + strand, within BBR_RS13095at 712.610 kb on + strand, within BBR_RS13095at 712.641 kb on - strand, within BBR_RS13095at 712.655 kb on + strand, within BBR_RS13095at 712.668 kb on + strand, within BBR_RS13095at 712.678 kb on + strand, within BBR_RS13095at 712.687 kb on + strand, within BBR_RS13095at 712.687 kb on + strand, within BBR_RS13095at 712.714 kb on + strand, within BBR_RS13095at 712.723 kb on - strand, within BBR_RS13095at 712.723 kb on - strand, within BBR_RS13095at 712.743 kb on + strand, within BBR_RS13095at 712.800 kb on - strand, within BBR_RS13095at 712.811 kb on + strand, within BBR_RS13095at 712.811 kb on + strand, within BBR_RS13095at 712.821 kb on + strand, within BBR_RS13095at 712.830 kb on - strand, within BBR_RS13095at 712.836 kb on + strand, within BBR_RS13095at 712.839 kb on + strand, within BBR_RS13095at 712.873 kb on - strand, within BBR_RS13095at 712.880 kb on - strand, within BBR_RS13095at 712.887 kb on + strand, within BBR_RS13095at 712.897 kb on + strand, within BBR_RS13095at 712.897 kb on + strand, within BBR_RS13095at 712.906 kb on + strand, within BBR_RS13095at 712.906 kb on + strand, within BBR_RS13095at 713.011 kb on + strand, within BBR_RS13095at 713.014 kb on - strand, within BBR_RS13095at 713.020 kb on - strand, within BBR_RS13095at 713.023 kb on + strand, within BBR_RS13095at 713.038 kb on + strand, within BBR_RS13095at 713.112 kb on + strandat 713.112 kb on + strandat 713.117 kb on + strandat 713.130 kb on - strandat 713.138 kb on - strandat 713.199 kb on + strandat 713.217 kb on - strandat 713.266 kb on + strandat 713.266 kb on + strandat 713.266 kb on + strandat 713.266 kb on + strandat 713.274 kb on - strandat 713.274 kb on - strandat 713.281 kb on + strandat 713.284 kb on - strandat 713.425 kb on - strandat 713.558 kb on + strandat 713.558 kb on + strandat 713.566 kb on - strandat 713.584 kb on + strandat 713.641 kb on - strandat 713.713 kb on + strand, within BBR_RS13100at 713.735 kb on - strand, within BBR_RS13100at 713.769 kb on - strand, within BBR_RS13100at 713.771 kb on + strand, within BBR_RS13100at 713.779 kb on - strand, within BBR_RS13100at 713.789 kb on - strand, within BBR_RS13100at 713.795 kb on + strand, within BBR_RS13100at 713.827 kb on + strand, within BBR_RS13100at 713.827 kb on + strand, within BBR_RS13100at 713.835 kb on - strand, within BBR_RS13100at 713.837 kb on + strand, within BBR_RS13100at 713.902 kb on + strand, within BBR_RS13100at 713.910 kb on + strand, within BBR_RS13100at 713.910 kb on + strand, within BBR_RS13100at 713.910 kb on + strand, within BBR_RS13100at 713.918 kb on - strand, within BBR_RS13100at 713.918 kb on - strand, within BBR_RS13100at 713.925 kb on + strand, within BBR_RS13100at 713.933 kb on - strand, within BBR_RS13100at 713.933 kb on - strand, within BBR_RS13100at 713.948 kb on + strand, within BBR_RS13100at 713.948 kb on + strand, within BBR_RS13100at 713.948 kb on + strand, within BBR_RS13100at 713.948 kb on + strand, within BBR_RS13100at 713.955 kb on - strand, within BBR_RS13100at 713.955 kb on - strand, within BBR_RS13100at 713.955 kb on - strand, within BBR_RS13100at 713.955 kb on - strand, within BBR_RS13100at 713.984 kb on + strand, within BBR_RS13100at 714.034 kb on + strand, within BBR_RS13100at 714.034 kb on + strand, within BBR_RS13100at 714.060 kb on - strand, within BBR_RS13100at 714.060 kb on - strand, within BBR_RS13100at 714.112 kb on - strand, within BBR_RS13100at 714.167 kb on + strand, within BBR_RS13100at 714.186 kb on + strand, within BBR_RS13100at 714.186 kb on + strand, within BBR_RS13100at 714.206 kb on - strand, within BBR_RS13100at 714.232 kb on - strand, within BBR_RS13100at 714.242 kb on - strand, within BBR_RS13100at 714.267 kb on - strand, within BBR_RS13100at 714.343 kb on + strand, within BBR_RS13100at 714.351 kb on - strand, within BBR_RS13100at 714.363 kb on + strand, within BBR_RS13100at 714.454 kb on + strand, within BBR_RS13100at 714.481 kb on - strand, within BBR_RS13100at 714.504 kb on + strand, within BBR_RS13100at 714.504 kb on - strand, within BBR_RS13100at 714.542 kb on + strand, within BBR_RS13100at 714.555 kb on - strand, within BBR_RS13100at 714.555 kb on - strand, within BBR_RS13100at 714.616 kb on + strand, within BBR_RS13100at 714.624 kb on - strand, within BBR_RS13100at 714.624 kb on - strand, within BBR_RS13100at 714.624 kb on - strand, within BBR_RS13100at 714.641 kb on + strand, within BBR_RS13100at 714.641 kb on + strand, within BBR_RS13100at 714.655 kb on + strand, within BBR_RS13100at 714.688 kb on + strand, within BBR_RS13100at 714.706 kb on - strand, within BBR_RS13100at 714.725 kb on + strand, within BBR_RS13100at 714.748 kb on - strandat 714.748 kb on - strandat 714.748 kb on - strandat 714.748 kb on - strandat 714.768 kb on + strandat 714.778 kb on + strandat 714.778 kb on + strandat 714.778 kb on + strandat 714.778 kb on + strandat 714.786 kb on - strandat 714.786 kb on - strandat 714.786 kb on - strandat 714.786 kb on - strandat 714.786 kb on - strandat 714.786 kb on - strandat 714.786 kb on - strandat 714.851 kb on + strandat 714.859 kb on - strandat 714.859 kb on - strandat 714.869 kb on + strandat 714.911 kb on - strandat 714.956 kb on - strandat 714.957 kb on + strandat 714.975 kb on + strandat 714.981 kb on + strandat 715.021 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet2; sample=FecalPellet; mouse16; day4
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712,558 + BBR_RS13095 0.66 +0.5
712,588 + BBR_RS13095 0.67 +0.5
712,610 + BBR_RS13095 0.68 +0.4
712,641 - BBR_RS13095 0.70 -1.5
712,655 + BBR_RS13095 0.70 +0.9
712,668 + BBR_RS13095 0.71 +1.2
712,678 + BBR_RS13095 0.71 +0.4
712,687 + BBR_RS13095 0.72 -3.2
712,687 + BBR_RS13095 0.72 +0.3
712,714 + BBR_RS13095 0.73 +1.3
712,723 - BBR_RS13095 0.74 +3.5
712,723 - BBR_RS13095 0.74 +3.9
712,743 + BBR_RS13095 0.74 +2.0
712,800 - BBR_RS13095 0.77 -2.1
712,811 + BBR_RS13095 0.78 +0.9
712,811 + BBR_RS13095 0.78 -0.2
712,821 + BBR_RS13095 0.78 +1.2
712,830 - BBR_RS13095 0.79 +0.3
712,836 + BBR_RS13095 0.79 +0.9
712,839 + BBR_RS13095 0.79 +2.7
712,873 - BBR_RS13095 0.81 +1.6
712,880 - BBR_RS13095 0.81 -0.8
712,887 + BBR_RS13095 0.81 +2.9
712,897 + BBR_RS13095 0.82 -0.7
712,897 + BBR_RS13095 0.82 -0.2
712,906 + BBR_RS13095 0.82 -0.9
712,906 + BBR_RS13095 0.82 -1.4
713,011 + BBR_RS13095 0.87 -0.4
713,014 - BBR_RS13095 0.88 +0.1
713,020 - BBR_RS13095 0.88 -0.9
713,023 + BBR_RS13095 0.88 -1.9
713,038 + BBR_RS13095 0.89 -1.6
713,112 + -0.4
713,112 + -0.4
713,117 + -0.4
713,130 - -0.1
713,138 - +1.0
713,199 + -1.5
713,217 - +0.7
713,266 + -1.0
713,266 + +0.9
713,266 + -1.4
713,266 + -1.7
713,274 - -2.3
713,274 - +2.2
713,281 + -0.2
713,284 - -1.2
713,425 - -1.1
713,558 + +0.1
713,558 + +2.8
713,566 - -2.5
713,584 + -2.0
713,641 - +1.1
713,713 + BBR_RS13100 0.14 -0.8
713,735 - BBR_RS13100 0.15 -2.0
713,769 - BBR_RS13100 0.18 -1.0
713,771 + BBR_RS13100 0.18 +2.2
713,779 - BBR_RS13100 0.19 +1.0
713,789 - BBR_RS13100 0.19 +0.2
713,795 + BBR_RS13100 0.20 +5.0
713,827 + BBR_RS13100 0.22 -1.0
713,827 + BBR_RS13100 0.22 -2.9
713,835 - BBR_RS13100 0.23 +1.5
713,837 + BBR_RS13100 0.23 +3.0
713,902 + BBR_RS13100 0.28 +0.3
713,910 + BBR_RS13100 0.28 +0.1
713,910 + BBR_RS13100 0.28 -1.9
713,910 + BBR_RS13100 0.28 +1.0
713,918 - BBR_RS13100 0.29 -0.2
713,918 - BBR_RS13100 0.29 +2.0
713,925 + BBR_RS13100 0.29 -1.6
713,933 - BBR_RS13100 0.30 +3.6
713,933 - BBR_RS13100 0.30 +3.9
713,948 + BBR_RS13100 0.31 +2.3
713,948 + BBR_RS13100 0.31 +0.6
713,948 + BBR_RS13100 0.31 +2.4
713,948 + BBR_RS13100 0.31 +3.3
713,955 - BBR_RS13100 0.32 -1.9
713,955 - BBR_RS13100 0.32 +0.7
713,955 - BBR_RS13100 0.32 +2.7
713,955 - BBR_RS13100 0.32 -2.2
713,984 + BBR_RS13100 0.34 +1.3
714,034 + BBR_RS13100 0.38 -0.8
714,034 + BBR_RS13100 0.38 +1.7
714,060 - BBR_RS13100 0.39 -0.2
714,060 - BBR_RS13100 0.39 +1.1
714,112 - BBR_RS13100 0.43 +1.6
714,167 + BBR_RS13100 0.47 +0.9
714,186 + BBR_RS13100 0.49 -1.3
714,186 + BBR_RS13100 0.49 -1.9
714,206 - BBR_RS13100 0.50 -0.7
714,232 - BBR_RS13100 0.52 -0.9
714,242 - BBR_RS13100 0.53 -1.9
714,267 - BBR_RS13100 0.55 -0.5
714,343 + BBR_RS13100 0.61 -0.9
714,351 - BBR_RS13100 0.61 -1.5
714,363 + BBR_RS13100 0.62 +3.0
714,454 + BBR_RS13100 0.69 +0.9
714,481 - BBR_RS13100 0.71 +3.8
714,504 + BBR_RS13100 0.72 +3.6
714,504 - BBR_RS13100 0.72 +2.1
714,542 + BBR_RS13100 0.75 +0.7
714,555 - BBR_RS13100 0.76 -1.6
714,555 - BBR_RS13100 0.76 +0.9
714,616 + BBR_RS13100 0.81 -0.3
714,624 - BBR_RS13100 0.81 +0.6
714,624 - BBR_RS13100 0.81 -0.7
714,624 - BBR_RS13100 0.81 +1.0
714,641 + BBR_RS13100 0.83 +0.1
714,641 + BBR_RS13100 0.83 +2.0
714,655 + BBR_RS13100 0.84 -0.6
714,688 + BBR_RS13100 0.86 -0.0
714,706 - BBR_RS13100 0.87 -1.3
714,725 + BBR_RS13100 0.89 -2.5
714,748 - -0.6
714,748 - +0.2
714,748 - -2.5
714,748 - +0.2
714,768 + -1.4
714,778 + -0.2
714,778 + -1.0
714,778 + -0.5
714,778 + -0.1
714,786 - +2.1
714,786 - +1.6
714,786 - -0.4
714,786 - +0.9
714,786 - -1.8
714,786 - +0.6
714,786 - -1.9
714,851 + -2.0
714,859 - +0.2
714,859 - +0.6
714,869 + +1.2
714,911 - +1.4
714,956 - +0.2
714,957 + +1.4
714,975 + +1.7
714,981 + +2.1
715,021 + -0.4

Or see this region's nucleotide sequence