Experiment: diet=StandardDiet2; sample=FecalPellet; mouse16; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12815 and BBR_RS12820 are separated by 301 nucleotides BBR_RS12820 and BBR_RS12825 are separated by 197 nucleotides
BBR_RS12815: BBR_RS12815 - hypothetical protein, at 624,485 to 624,919
_RS12815
BBR_RS12820: BBR_RS12820 - hypothetical protein, at 625,221 to 626,657
_RS12820
BBR_RS12825: BBR_RS12825 - hypothetical protein, at 626,855 to 628,222
_RS12825
Position (kb) 625
626
627 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 624.227 kb on + strand at 624.233 kb on - strand at 624.233 kb on - strand at 624.243 kb on - strand at 624.257 kb on - strand at 624.283 kb on - strand at 624.285 kb on + strand at 624.293 kb on - strand at 624.361 kb on + strand at 624.369 kb on - strand at 624.369 kb on - strand at 624.373 kb on + strand at 624.455 kb on + strand at 624.455 kb on + strand at 624.455 kb on - strand at 624.492 kb on + strand at 624.493 kb on - strand at 624.519 kb on - strand at 624.519 kb on - strand at 624.520 kb on - strand at 624.528 kb on - strand at 624.557 kb on + strand, within BBR_RS12815 at 624.571 kb on + strand, within BBR_RS12815 at 624.571 kb on + strand, within BBR_RS12815 at 624.599 kb on + strand, within BBR_RS12815 at 624.632 kb on - strand, within BBR_RS12815 at 624.670 kb on + strand, within BBR_RS12815 at 624.672 kb on - strand, within BBR_RS12815 at 624.693 kb on + strand, within BBR_RS12815 at 624.696 kb on - strand, within BBR_RS12815 at 624.700 kb on - strand, within BBR_RS12815 at 624.701 kb on - strand, within BBR_RS12815 at 624.701 kb on - strand, within BBR_RS12815 at 624.701 kb on - strand, within BBR_RS12815 at 624.717 kb on + strand, within BBR_RS12815 at 624.725 kb on - strand, within BBR_RS12815 at 624.735 kb on - strand, within BBR_RS12815 at 624.761 kb on + strand, within BBR_RS12815 at 624.788 kb on - strand, within BBR_RS12815 at 624.852 kb on - strand, within BBR_RS12815 at 624.859 kb on - strand, within BBR_RS12815 at 624.873 kb on + strand, within BBR_RS12815 at 624.873 kb on + strand, within BBR_RS12815 at 624.873 kb on + strand, within BBR_RS12815 at 624.881 kb on - strand at 624.881 kb on - strand at 624.899 kb on - strand at 624.928 kb on + strand at 624.936 kb on - strand at 624.936 kb on - strand at 625.094 kb on + strand at 625.095 kb on - strand at 625.095 kb on - strand at 625.100 kb on - strand at 625.117 kb on - strand at 625.137 kb on + strand at 625.148 kb on + strand at 625.168 kb on + strand at 625.168 kb on + strand at 625.221 kb on - strand at 625.257 kb on + strand at 625.347 kb on + strand at 625.353 kb on - strand at 625.400 kb on + strand, within BBR_RS12820 at 625.401 kb on + strand, within BBR_RS12820 at 625.447 kb on + strand, within BBR_RS12820 at 625.475 kb on + strand, within BBR_RS12820 at 625.505 kb on + strand, within BBR_RS12820 at 625.560 kb on - strand, within BBR_RS12820 at 625.662 kb on - strand, within BBR_RS12820 at 625.705 kb on + strand, within BBR_RS12820 at 625.708 kb on - strand, within BBR_RS12820 at 625.727 kb on - strand, within BBR_RS12820 at 625.727 kb on - strand, within BBR_RS12820 at 625.734 kb on + strand, within BBR_RS12820 at 625.734 kb on + strand, within BBR_RS12820 at 625.760 kb on + strand, within BBR_RS12820 at 625.773 kb on + strand, within BBR_RS12820 at 625.798 kb on - strand, within BBR_RS12820 at 625.806 kb on - strand, within BBR_RS12820 at 625.812 kb on - strand, within BBR_RS12820 at 625.831 kb on + strand, within BBR_RS12820 at 625.831 kb on + strand, within BBR_RS12820 at 625.876 kb on + strand, within BBR_RS12820 at 625.883 kb on + strand, within BBR_RS12820 at 626.018 kb on + strand, within BBR_RS12820 at 626.020 kb on + strand, within BBR_RS12820 at 626.020 kb on + strand, within BBR_RS12820 at 626.020 kb on + strand, within BBR_RS12820 at 626.044 kb on + strand, within BBR_RS12820 at 626.047 kb on + strand, within BBR_RS12820 at 626.047 kb on + strand, within BBR_RS12820 at 626.047 kb on + strand, within BBR_RS12820 at 626.047 kb on + strand, within BBR_RS12820 at 626.055 kb on - strand, within BBR_RS12820 at 626.147 kb on + strand, within BBR_RS12820 at 626.195 kb on + strand, within BBR_RS12820 at 626.197 kb on + strand, within BBR_RS12820 at 626.203 kb on - strand, within BBR_RS12820 at 626.219 kb on + strand, within BBR_RS12820 at 626.240 kb on + strand, within BBR_RS12820 at 626.258 kb on + strand, within BBR_RS12820 at 626.294 kb on + strand, within BBR_RS12820 at 626.344 kb on + strand, within BBR_RS12820 at 626.344 kb on + strand, within BBR_RS12820 at 626.411 kb on + strand, within BBR_RS12820 at 626.430 kb on + strand, within BBR_RS12820 at 626.448 kb on + strand, within BBR_RS12820 at 626.496 kb on + strand, within BBR_RS12820 at 626.496 kb on + strand, within BBR_RS12820 at 626.503 kb on + strand, within BBR_RS12820 at 626.509 kb on - strand, within BBR_RS12820 at 626.549 kb on + strand at 626.619 kb on - strand at 626.622 kb on + strand at 626.667 kb on - strand at 626.703 kb on - strand at 626.711 kb on - strand at 626.717 kb on + strand at 626.717 kb on + strand at 626.718 kb on + strand at 626.806 kb on + strand at 626.806 kb on + strand at 626.821 kb on + strand at 626.824 kb on - strand at 626.824 kb on - strand at 626.829 kb on - strand at 626.829 kb on - strand at 626.886 kb on + strand at 626.964 kb on + strand at 626.964 kb on + strand at 626.967 kb on - strand at 627.011 kb on - strand, within BBR_RS12825 at 627.029 kb on - strand, within BBR_RS12825 at 627.037 kb on + strand, within BBR_RS12825 at 627.077 kb on + strand, within BBR_RS12825 at 627.077 kb on + strand, within BBR_RS12825 at 627.085 kb on - strand, within BBR_RS12825 at 627.095 kb on - strand, within BBR_RS12825 at 627.163 kb on - strand, within BBR_RS12825 at 627.170 kb on - strand, within BBR_RS12825 at 627.316 kb on + strand, within BBR_RS12825 at 627.316 kb on + strand, within BBR_RS12825 at 627.332 kb on - strand, within BBR_RS12825 at 627.356 kb on - strand, within BBR_RS12825 at 627.360 kb on + strand, within BBR_RS12825 at 627.435 kb on - strand, within BBR_RS12825 at 627.460 kb on + strand, within BBR_RS12825 at 627.468 kb on - strand, within BBR_RS12825 at 627.514 kb on + strand, within BBR_RS12825 at 627.554 kb on + strand, within BBR_RS12825 at 627.568 kb on + strand, within BBR_RS12825 at 627.568 kb on + strand, within BBR_RS12825 at 627.575 kb on + strand, within BBR_RS12825 at 627.594 kb on - strand, within BBR_RS12825 at 627.594 kb on - strand, within BBR_RS12825 at 627.596 kb on + strand, within BBR_RS12825 at 627.604 kb on + strand, within BBR_RS12825 at 627.612 kb on - strand, within BBR_RS12825 at 627.612 kb on - strand, within BBR_RS12825 at 627.622 kb on + strand, within BBR_RS12825 at 627.635 kb on + strand, within BBR_RS12825 at 627.643 kb on - strand, within BBR_RS12825
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet2; sample=FecalPellet; mouse16; day4 remove 624,227 + -1.5 624,233 - -0.9 624,233 - -0.6 624,243 - -0.6 624,257 - -1.3 624,283 - -1.3 624,285 + -1.4 624,293 - +1.8 624,361 + -1.9 624,369 - +0.3 624,369 - -1.8 624,373 + -1.8 624,455 + +0.7 624,455 + +0.2 624,455 - -2.6 624,492 + +2.2 624,493 - +1.8 624,519 - -1.5 624,519 - -2.4 624,520 - -1.0 624,528 - -0.9 624,557 + BBR_RS12815 0.17 -1.5 624,571 + BBR_RS12815 0.20 +2.8 624,571 + BBR_RS12815 0.20 +1.6 624,599 + BBR_RS12815 0.26 +0.8 624,632 - BBR_RS12815 0.34 +0.0 624,670 + BBR_RS12815 0.43 -0.1 624,672 - BBR_RS12815 0.43 -0.2 624,693 + BBR_RS12815 0.48 -0.3 624,696 - BBR_RS12815 0.49 -0.3 624,700 - BBR_RS12815 0.49 +0.6 624,701 - BBR_RS12815 0.50 -1.3 624,701 - BBR_RS12815 0.50 +0.4 624,701 - BBR_RS12815 0.50 -1.9 624,717 + BBR_RS12815 0.53 -0.6 624,725 - BBR_RS12815 0.55 -1.1 624,735 - BBR_RS12815 0.57 -1.0 624,761 + BBR_RS12815 0.63 -0.3 624,788 - BBR_RS12815 0.70 +2.5 624,852 - BBR_RS12815 0.84 +0.2 624,859 - BBR_RS12815 0.86 +1.6 624,873 + BBR_RS12815 0.89 -0.4 624,873 + BBR_RS12815 0.89 -1.0 624,873 + BBR_RS12815 0.89 +0.3 624,881 - -0.0 624,881 - +0.4 624,899 - -1.8 624,928 + +1.2 624,936 - +0.9 624,936 - +0.2 625,094 + +0.3 625,095 - +1.8 625,095 - +0.5 625,100 - -0.1 625,117 - -0.1 625,137 + -0.4 625,148 + -0.8 625,168 + -0.3 625,168 + -1.1 625,221 - +0.3 625,257 + -3.7 625,347 + -3.8 625,353 - -2.6 625,400 + BBR_RS12820 0.12 -2.3 625,401 + BBR_RS12820 0.13 -2.5 625,447 + BBR_RS12820 0.16 -0.8 625,475 + BBR_RS12820 0.18 -2.4 625,505 + BBR_RS12820 0.20 -1.9 625,560 - BBR_RS12820 0.24 -1.2 625,662 - BBR_RS12820 0.31 -2.2 625,705 + BBR_RS12820 0.34 -2.4 625,708 - BBR_RS12820 0.34 -1.5 625,727 - BBR_RS12820 0.35 -0.7 625,727 - BBR_RS12820 0.35 -2.0 625,734 + BBR_RS12820 0.36 +0.3 625,734 + BBR_RS12820 0.36 -1.9 625,760 + BBR_RS12820 0.38 -1.5 625,773 + BBR_RS12820 0.38 -3.3 625,798 - BBR_RS12820 0.40 -2.7 625,806 - BBR_RS12820 0.41 -1.9 625,812 - BBR_RS12820 0.41 -1.8 625,831 + BBR_RS12820 0.42 -1.8 625,831 + BBR_RS12820 0.42 -1.4 625,876 + BBR_RS12820 0.46 -2.4 625,883 + BBR_RS12820 0.46 -2.1 626,018 + BBR_RS12820 0.55 -2.2 626,020 + BBR_RS12820 0.56 -2.3 626,020 + BBR_RS12820 0.56 -1.2 626,020 + BBR_RS12820 0.56 -1.8 626,044 + BBR_RS12820 0.57 -2.3 626,047 + BBR_RS12820 0.57 -2.9 626,047 + BBR_RS12820 0.57 -2.7 626,047 + BBR_RS12820 0.57 -2.2 626,047 + BBR_RS12820 0.57 -3.3 626,055 - BBR_RS12820 0.58 -3.4 626,147 + BBR_RS12820 0.64 -1.5 626,195 + BBR_RS12820 0.68 -1.9 626,197 + BBR_RS12820 0.68 -2.0 626,203 - BBR_RS12820 0.68 -2.0 626,219 + BBR_RS12820 0.69 -2.1 626,240 + BBR_RS12820 0.71 -0.9 626,258 + BBR_RS12820 0.72 -2.2 626,294 + BBR_RS12820 0.75 -2.9 626,344 + BBR_RS12820 0.78 -3.1 626,344 + BBR_RS12820 0.78 -3.1 626,411 + BBR_RS12820 0.83 -3.5 626,430 + BBR_RS12820 0.84 -1.2 626,448 + BBR_RS12820 0.85 -1.1 626,496 + BBR_RS12820 0.89 -2.9 626,496 + BBR_RS12820 0.89 -1.0 626,503 + BBR_RS12820 0.89 -0.5 626,509 - BBR_RS12820 0.90 -1.1 626,549 + -2.2 626,619 - -0.9 626,622 + +0.1 626,667 - +1.0 626,703 - -2.3 626,711 - -1.6 626,717 + -0.4 626,717 + -0.8 626,718 + +2.0 626,806 + +3.1 626,806 + +2.8 626,821 + -0.9 626,824 - +0.6 626,824 - -3.1 626,829 - -0.7 626,829 - -2.4 626,886 + -0.8 626,964 + -0.2 626,964 + -2.6 626,967 - -1.5 627,011 - BBR_RS12825 0.11 -2.2 627,029 - BBR_RS12825 0.13 -0.6 627,037 + BBR_RS12825 0.13 -1.2 627,077 + BBR_RS12825 0.16 -2.7 627,077 + BBR_RS12825 0.16 -3.8 627,085 - BBR_RS12825 0.17 -1.3 627,095 - BBR_RS12825 0.18 -0.6 627,163 - BBR_RS12825 0.23 -0.6 627,170 - BBR_RS12825 0.23 +2.1 627,316 + BBR_RS12825 0.34 -2.6 627,316 + BBR_RS12825 0.34 -2.2 627,332 - BBR_RS12825 0.35 -0.6 627,356 - BBR_RS12825 0.37 +0.5 627,360 + BBR_RS12825 0.37 -2.4 627,435 - BBR_RS12825 0.42 -2.0 627,460 + BBR_RS12825 0.44 -0.2 627,468 - BBR_RS12825 0.45 +2.5 627,514 + BBR_RS12825 0.48 -0.9 627,554 + BBR_RS12825 0.51 -3.5 627,568 + BBR_RS12825 0.52 +0.4 627,568 + BBR_RS12825 0.52 +0.3 627,575 + BBR_RS12825 0.53 -0.2 627,594 - BBR_RS12825 0.54 -1.5 627,594 - BBR_RS12825 0.54 +0.1 627,596 + BBR_RS12825 0.54 -1.2 627,604 + BBR_RS12825 0.55 -0.6 627,612 - BBR_RS12825 0.55 -0.3 627,612 - BBR_RS12825 0.55 +1.5 627,622 + BBR_RS12825 0.56 +1.6 627,635 + BBR_RS12825 0.57 -0.3 627,643 - BBR_RS12825 0.58 +2.6
Or see this region's nucleotide sequence