Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12550

Experiment: diet=StandardDiet2; sample=FecalPellet; mouse16; day4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBBR_RS12545 and BBR_RS12550 are separated by 93 nucleotidesBBR_RS12550 and BBR_RS12555 are separated by 275 nucleotides BBR_RS12545: BBR_RS12545 - DUF4012 domain-containing protein, at 571,304 to 573,064 _RS12545 BBR_RS12550: BBR_RS12550 - sugar transferase, at 573,158 to 574,876 _RS12550 BBR_RS12555: BBR_RS12555 - protein-tyrosine-phosphatase, at 575,152 to 575,757 _RS12555 Position (kb) 573 574 575Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 572.177 kb on - strand, within BBR_RS12545at 572.304 kb on + strand, within BBR_RS12545at 572.350 kb on + strand, within BBR_RS12545at 572.497 kb on + strand, within BBR_RS12545at 572.543 kb on + strand, within BBR_RS12545at 572.543 kb on - strand, within BBR_RS12545at 572.604 kb on + strand, within BBR_RS12545at 572.919 kb on + strandat 572.954 kb on + strandat 572.962 kb on + strandat 572.969 kb on - strandat 573.012 kb on - strandat 573.015 kb on + strandat 573.036 kb on + strandat 573.084 kb on - strandat 573.084 kb on - strandat 573.086 kb on + strandat 573.098 kb on + strandat 573.106 kb on - strandat 573.108 kb on - strandat 573.131 kb on - strandat 573.147 kb on - strandat 573.158 kb on + strandat 573.166 kb on - strandat 573.166 kb on - strandat 573.166 kb on - strandat 573.166 kb on - strandat 573.243 kb on - strandat 573.265 kb on + strandat 573.273 kb on - strandat 573.273 kb on - strandat 573.304 kb on + strandat 573.309 kb on + strandat 573.336 kb on + strand, within BBR_RS12550at 573.361 kb on - strand, within BBR_RS12550at 573.361 kb on - strand, within BBR_RS12550at 573.366 kb on - strand, within BBR_RS12550at 573.371 kb on - strand, within BBR_RS12550at 573.375 kb on + strand, within BBR_RS12550at 573.418 kb on - strand, within BBR_RS12550at 573.418 kb on - strand, within BBR_RS12550at 573.500 kb on - strand, within BBR_RS12550at 573.594 kb on + strand, within BBR_RS12550at 573.622 kb on - strand, within BBR_RS12550at 573.642 kb on + strand, within BBR_RS12550at 573.642 kb on + strand, within BBR_RS12550at 573.648 kb on + strand, within BBR_RS12550at 573.648 kb on + strand, within BBR_RS12550at 573.665 kb on - strand, within BBR_RS12550at 573.723 kb on - strand, within BBR_RS12550at 573.738 kb on + strand, within BBR_RS12550at 573.764 kb on + strand, within BBR_RS12550at 573.769 kb on + strand, within BBR_RS12550at 573.828 kb on - strand, within BBR_RS12550at 573.830 kb on + strand, within BBR_RS12550at 573.833 kb on + strand, within BBR_RS12550at 573.838 kb on - strand, within BBR_RS12550at 573.843 kb on - strand, within BBR_RS12550at 573.875 kb on + strand, within BBR_RS12550at 573.875 kb on + strand, within BBR_RS12550at 573.895 kb on + strand, within BBR_RS12550at 573.935 kb on + strand, within BBR_RS12550at 573.943 kb on - strand, within BBR_RS12550at 573.961 kb on + strand, within BBR_RS12550at 574.052 kb on + strand, within BBR_RS12550at 574.070 kb on - strand, within BBR_RS12550at 574.070 kb on - strand, within BBR_RS12550at 574.070 kb on - strand, within BBR_RS12550at 574.079 kb on + strand, within BBR_RS12550at 574.106 kb on - strand, within BBR_RS12550at 574.111 kb on - strand, within BBR_RS12550at 574.114 kb on + strand, within BBR_RS12550at 574.114 kb on + strand, within BBR_RS12550at 574.120 kb on + strand, within BBR_RS12550at 574.121 kb on + strand, within BBR_RS12550at 574.122 kb on - strand, within BBR_RS12550at 574.134 kb on - strand, within BBR_RS12550at 574.147 kb on + strand, within BBR_RS12550at 574.155 kb on - strand, within BBR_RS12550at 574.240 kb on + strand, within BBR_RS12550at 574.246 kb on - strand, within BBR_RS12550at 574.287 kb on - strand, within BBR_RS12550at 574.326 kb on + strand, within BBR_RS12550at 574.345 kb on + strand, within BBR_RS12550at 574.353 kb on - strand, within BBR_RS12550at 574.390 kb on + strand, within BBR_RS12550at 574.398 kb on - strand, within BBR_RS12550at 574.398 kb on - strand, within BBR_RS12550at 574.432 kb on - strand, within BBR_RS12550at 574.442 kb on - strand, within BBR_RS12550at 574.442 kb on - strand, within BBR_RS12550at 574.461 kb on - strand, within BBR_RS12550at 574.478 kb on + strand, within BBR_RS12550at 574.481 kb on + strand, within BBR_RS12550at 574.496 kb on + strand, within BBR_RS12550at 574.496 kb on - strand, within BBR_RS12550at 574.501 kb on + strand, within BBR_RS12550at 574.501 kb on + strand, within BBR_RS12550at 574.501 kb on + strand, within BBR_RS12550at 574.509 kb on - strand, within BBR_RS12550at 574.516 kb on + strand, within BBR_RS12550at 574.528 kb on - strand, within BBR_RS12550at 574.529 kb on - strand, within BBR_RS12550at 574.534 kb on - strand, within BBR_RS12550at 574.536 kb on - strand, within BBR_RS12550at 574.536 kb on - strand, within BBR_RS12550at 574.545 kb on + strand, within BBR_RS12550at 574.577 kb on - strand, within BBR_RS12550at 574.603 kb on - strand, within BBR_RS12550at 574.604 kb on + strand, within BBR_RS12550at 574.612 kb on - strand, within BBR_RS12550at 574.642 kb on + strand, within BBR_RS12550at 574.642 kb on + strand, within BBR_RS12550at 574.664 kb on + strand, within BBR_RS12550at 574.706 kb on - strandat 574.745 kb on - strandat 574.785 kb on - strandat 574.785 kb on - strandat 574.787 kb on + strandat 574.804 kb on + strandat 574.806 kb on + strandat 574.806 kb on + strandat 574.806 kb on + strandat 574.807 kb on - strandat 574.814 kb on - strandat 574.814 kb on - strandat 574.814 kb on - strandat 574.814 kb on - strandat 574.814 kb on - strandat 574.814 kb on - strandat 574.818 kb on + strandat 574.824 kb on - strandat 574.885 kb on + strandat 574.903 kb on - strandat 574.903 kb on - strandat 574.903 kb on - strandat 574.903 kb on - strandat 574.943 kb on + strandat 574.951 kb on - strandat 575.139 kb on - strandat 575.141 kb on + strandat 575.194 kb on + strandat 575.265 kb on + strand, within BBR_RS12555at 575.265 kb on + strand, within BBR_RS12555at 575.271 kb on + strand, within BBR_RS12555at 575.287 kb on + strand, within BBR_RS12555at 575.287 kb on + strand, within BBR_RS12555at 575.292 kb on + strand, within BBR_RS12555at 575.337 kb on + strand, within BBR_RS12555at 575.349 kb on + strand, within BBR_RS12555at 575.356 kb on + strand, within BBR_RS12555at 575.430 kb on + strand, within BBR_RS12555at 575.430 kb on + strand, within BBR_RS12555at 575.503 kb on + strand, within BBR_RS12555at 575.508 kb on + strand, within BBR_RS12555at 575.523 kb on - strand, within BBR_RS12555at 575.553 kb on - strand, within BBR_RS12555at 575.657 kb on - strand, within BBR_RS12555at 575.672 kb on - strand, within BBR_RS12555at 575.686 kb on + strand, within BBR_RS12555at 575.750 kb on - strandat 575.760 kb on - strandat 575.776 kb on + strandat 575.805 kb on + strandat 575.805 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet2; sample=FecalPellet; mouse16; day4
remove
572,177 - BBR_RS12545 0.50 +0.8
572,304 + BBR_RS12545 0.57 +0.2
572,350 + BBR_RS12545 0.59 -1.6
572,497 + BBR_RS12545 0.68 -0.9
572,543 + BBR_RS12545 0.70 +0.4
572,543 - BBR_RS12545 0.70 -1.2
572,604 + BBR_RS12545 0.74 -1.0
572,919 + -1.5
572,954 + +0.3
572,962 + +0.1
572,969 - -1.3
573,012 - -1.4
573,015 + +0.0
573,036 + +0.2
573,084 - -2.0
573,084 - -1.4
573,086 + +2.3
573,098 + +0.3
573,106 - +0.9
573,108 - +0.7
573,131 - +0.9
573,147 - +1.2
573,158 + +0.4
573,166 - +0.4
573,166 - -0.1
573,166 - +2.9
573,166 - +0.8
573,243 - -2.4
573,265 + -1.5
573,273 - -0.6
573,273 - -2.0
573,304 + -2.1
573,309 + +0.9
573,336 + BBR_RS12550 0.10 -1.8
573,361 - BBR_RS12550 0.12 -0.6
573,361 - BBR_RS12550 0.12 -1.4
573,366 - BBR_RS12550 0.12 -2.0
573,371 - BBR_RS12550 0.12 -3.4
573,375 + BBR_RS12550 0.13 -1.3
573,418 - BBR_RS12550 0.15 -2.3
573,418 - BBR_RS12550 0.15 -3.4
573,500 - BBR_RS12550 0.20 -3.2
573,594 + BBR_RS12550 0.25 +0.2
573,622 - BBR_RS12550 0.27 -0.4
573,642 + BBR_RS12550 0.28 -1.1
573,642 + BBR_RS12550 0.28 -1.2
573,648 + BBR_RS12550 0.29 -1.9
573,648 + BBR_RS12550 0.29 -1.9
573,665 - BBR_RS12550 0.29 -1.7
573,723 - BBR_RS12550 0.33 -3.4
573,738 + BBR_RS12550 0.34 -1.1
573,764 + BBR_RS12550 0.35 -0.1
573,769 + BBR_RS12550 0.36 -1.9
573,828 - BBR_RS12550 0.39 -2.5
573,830 + BBR_RS12550 0.39 -1.9
573,833 + BBR_RS12550 0.39 -1.9
573,838 - BBR_RS12550 0.40 -1.4
573,843 - BBR_RS12550 0.40 -0.8
573,875 + BBR_RS12550 0.42 -0.6
573,875 + BBR_RS12550 0.42 -2.4
573,895 + BBR_RS12550 0.43 -1.8
573,935 + BBR_RS12550 0.45 -0.1
573,943 - BBR_RS12550 0.46 -1.9
573,961 + BBR_RS12550 0.47 -2.4
574,052 + BBR_RS12550 0.52 -2.9
574,070 - BBR_RS12550 0.53 -0.6
574,070 - BBR_RS12550 0.53 -1.7
574,070 - BBR_RS12550 0.53 -0.7
574,079 + BBR_RS12550 0.54 -1.1
574,106 - BBR_RS12550 0.55 -2.9
574,111 - BBR_RS12550 0.55 -1.9
574,114 + BBR_RS12550 0.56 -2.8
574,114 + BBR_RS12550 0.56 -3.4
574,120 + BBR_RS12550 0.56 -2.6
574,121 + BBR_RS12550 0.56 -3.4
574,122 - BBR_RS12550 0.56 -0.9
574,134 - BBR_RS12550 0.57 -2.3
574,147 + BBR_RS12550 0.58 -2.4
574,155 - BBR_RS12550 0.58 -2.3
574,240 + BBR_RS12550 0.63 -2.1
574,246 - BBR_RS12550 0.63 -2.8
574,287 - BBR_RS12550 0.66 -2.1
574,326 + BBR_RS12550 0.68 +0.1
574,345 + BBR_RS12550 0.69 -2.2
574,353 - BBR_RS12550 0.70 -2.5
574,390 + BBR_RS12550 0.72 -1.6
574,398 - BBR_RS12550 0.72 -3.4
574,398 - BBR_RS12550 0.72 -3.5
574,432 - BBR_RS12550 0.74 -2.5
574,442 - BBR_RS12550 0.75 -3.3
574,442 - BBR_RS12550 0.75 -3.1
574,461 - BBR_RS12550 0.76 -1.2
574,478 + BBR_RS12550 0.77 -2.3
574,481 + BBR_RS12550 0.77 -1.4
574,496 + BBR_RS12550 0.78 -2.5
574,496 - BBR_RS12550 0.78 -2.8
574,501 + BBR_RS12550 0.78 -2.4
574,501 + BBR_RS12550 0.78 -2.0
574,501 + BBR_RS12550 0.78 -1.7
574,509 - BBR_RS12550 0.79 -2.1
574,516 + BBR_RS12550 0.79 -1.8
574,528 - BBR_RS12550 0.80 -1.8
574,529 - BBR_RS12550 0.80 -1.7
574,534 - BBR_RS12550 0.80 -1.7
574,536 - BBR_RS12550 0.80 -0.5
574,536 - BBR_RS12550 0.80 -1.7
574,545 + BBR_RS12550 0.81 -0.6
574,577 - BBR_RS12550 0.83 -2.4
574,603 - BBR_RS12550 0.84 -1.5
574,604 + BBR_RS12550 0.84 -3.8
574,612 - BBR_RS12550 0.85 -1.1
574,642 + BBR_RS12550 0.86 -1.4
574,642 + BBR_RS12550 0.86 -1.6
574,664 + BBR_RS12550 0.88 -2.1
574,706 - +0.3
574,745 - -0.1
574,785 - -1.6
574,785 - -0.9
574,787 + -2.2
574,804 + -2.3
574,806 + -2.1
574,806 + -1.5
574,806 + +0.2
574,807 - -1.2
574,814 - -3.1
574,814 - -1.5
574,814 - -1.5
574,814 - -3.6
574,814 - +0.7
574,814 - -1.7
574,818 + -2.3
574,824 - -1.4
574,885 + -2.3
574,903 - +0.8
574,903 - -0.2
574,903 - -0.9
574,903 - -1.5
574,943 + -1.6
574,951 - -0.1
575,139 - -2.1
575,141 + -2.4
575,194 + -2.1
575,265 + BBR_RS12555 0.19 -1.8
575,265 + BBR_RS12555 0.19 -1.9
575,271 + BBR_RS12555 0.20 -3.9
575,287 + BBR_RS12555 0.22 -2.2
575,287 + BBR_RS12555 0.22 -1.7
575,292 + BBR_RS12555 0.23 -1.6
575,337 + BBR_RS12555 0.31 -1.4
575,349 + BBR_RS12555 0.33 -2.2
575,356 + BBR_RS12555 0.34 -3.2
575,430 + BBR_RS12555 0.46 -2.0
575,430 + BBR_RS12555 0.46 -2.7
575,503 + BBR_RS12555 0.58 -3.1
575,508 + BBR_RS12555 0.59 -2.9
575,523 - BBR_RS12555 0.61 -1.2
575,553 - BBR_RS12555 0.66 -2.3
575,657 - BBR_RS12555 0.83 -2.5
575,672 - BBR_RS12555 0.86 +1.6
575,686 + BBR_RS12555 0.88 -1.7
575,750 - -1.6
575,760 - +2.0
575,776 + -0.7
575,805 + -1.8
575,805 + +2.6

Or see this region's nucleotide sequence