Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS33900 and AZOBR_RS33905 are separated by 40 nucleotides AZOBR_RS33905 and AZOBR_RS33910 are separated by 28 nucleotides
AZOBR_RS33900: AZOBR_RS33900 - ADP-L-glycero-D-manno-heptose-6-epimerase, at 149,792 to 150,778
_RS33900
AZOBR_RS33905: AZOBR_RS33905 - D-beta-D-heptose 1-phosphate adenosyltransferase, at 150,819 to 152,276
_RS33905
AZOBR_RS33910: AZOBR_RS33910 - phosphoheptose isomerase, at 152,305 to 152,883
_RS33910
Position (kb) 150
151
152
153 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 150.007 kb on + strand, within AZOBR_RS33900 at 150.122 kb on + strand, within AZOBR_RS33900 at 150.123 kb on - strand, within AZOBR_RS33900 at 150.123 kb on - strand, within AZOBR_RS33900 at 150.123 kb on - strand, within AZOBR_RS33900 at 150.143 kb on + strand, within AZOBR_RS33900 at 150.144 kb on - strand, within AZOBR_RS33900 at 150.144 kb on - strand, within AZOBR_RS33900 at 150.144 kb on - strand, within AZOBR_RS33900 at 150.218 kb on + strand, within AZOBR_RS33900 at 150.219 kb on - strand, within AZOBR_RS33900 at 150.219 kb on - strand, within AZOBR_RS33900 at 150.336 kb on - strand, within AZOBR_RS33900 at 150.431 kb on + strand, within AZOBR_RS33900 at 150.432 kb on - strand at 150.432 kb on - strand, within AZOBR_RS33900 at 150.432 kb on - strand, within AZOBR_RS33900 at 150.465 kb on - strand, within AZOBR_RS33900 at 150.465 kb on - strand, within AZOBR_RS33900 at 150.465 kb on - strand, within AZOBR_RS33900 at 150.465 kb on - strand, within AZOBR_RS33900 at 150.465 kb on - strand, within AZOBR_RS33900 at 150.581 kb on + strand, within AZOBR_RS33900 at 150.615 kb on - strand, within AZOBR_RS33900 at 150.647 kb on + strand, within AZOBR_RS33900 at 150.653 kb on + strand, within AZOBR_RS33900 at 150.653 kb on + strand, within AZOBR_RS33900 at 150.653 kb on + strand, within AZOBR_RS33900 at 150.656 kb on + strand, within AZOBR_RS33900 at 150.657 kb on - strand, within AZOBR_RS33900 at 150.657 kb on - strand, within AZOBR_RS33900 at 150.657 kb on - strand, within AZOBR_RS33900 at 150.657 kb on - strand, within AZOBR_RS33900 at 150.753 kb on + strand at 150.754 kb on - strand at 150.828 kb on + strand at 150.828 kb on + strand at 150.828 kb on + strand at 150.828 kb on + strand at 150.829 kb on - strand at 150.829 kb on - strand at 150.829 kb on - strand at 150.829 kb on - strand at 150.834 kb on - strand at 151.290 kb on + strand, within AZOBR_RS33905 at 151.291 kb on - strand, within AZOBR_RS33905 at 151.389 kb on + strand, within AZOBR_RS33905 at 151.390 kb on - strand, within AZOBR_RS33905 at 151.399 kb on - strand, within AZOBR_RS33905 at 152.151 kb on + strand at 152.158 kb on + strand at 152.881 kb on + strand at 152.885 kb on + strand at 152.999 kb on + strand at 153.012 kb on + strand at 153.012 kb on + strand at 153.013 kb on - strand at 153.013 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 150,007 + AZOBR_RS33900 0.22 +2.4 150,122 + AZOBR_RS33900 0.33 -0.6 150,123 - AZOBR_RS33900 0.34 +0.2 150,123 - AZOBR_RS33900 0.34 +2.0 150,123 - AZOBR_RS33900 0.34 -1.2 150,143 + AZOBR_RS33900 0.36 -1.5 150,144 - AZOBR_RS33900 0.36 +1.6 150,144 - AZOBR_RS33900 0.36 -1.4 150,144 - AZOBR_RS33900 0.36 -1.4 150,218 + AZOBR_RS33900 0.43 -0.6 150,219 - AZOBR_RS33900 0.43 +2.9 150,219 - AZOBR_RS33900 0.43 -0.4 150,336 - AZOBR_RS33900 0.55 +0.3 150,431 + AZOBR_RS33900 0.65 -0.8 150,432 - -1.1 150,432 - AZOBR_RS33900 0.65 -0.5 150,432 - AZOBR_RS33900 0.65 +0.7 150,465 - AZOBR_RS33900 0.68 +0.3 150,465 - AZOBR_RS33900 0.68 -1.6 150,465 - AZOBR_RS33900 0.68 -0.7 150,465 - AZOBR_RS33900 0.68 +1.0 150,465 - AZOBR_RS33900 0.68 -0.5 150,581 + AZOBR_RS33900 0.80 +0.4 150,615 - AZOBR_RS33900 0.83 +0.6 150,647 + AZOBR_RS33900 0.87 -2.3 150,653 + AZOBR_RS33900 0.87 -3.1 150,653 + AZOBR_RS33900 0.87 +1.8 150,653 + AZOBR_RS33900 0.87 +0.7 150,656 + AZOBR_RS33900 0.88 +1.1 150,657 - AZOBR_RS33900 0.88 +1.9 150,657 - AZOBR_RS33900 0.88 +2.2 150,657 - AZOBR_RS33900 0.88 -1.6 150,657 - AZOBR_RS33900 0.88 -2.3 150,753 + -0.3 150,754 - +0.3 150,828 + +0.6 150,828 + -0.5 150,828 + +0.9 150,828 + +1.9 150,829 - -1.0 150,829 - -0.2 150,829 - -0.1 150,829 - -1.3 150,834 - +1.6 151,290 + AZOBR_RS33905 0.32 -0.8 151,291 - AZOBR_RS33905 0.32 +2.6 151,389 + AZOBR_RS33905 0.39 -0.3 151,390 - AZOBR_RS33905 0.39 +4.6 151,399 - AZOBR_RS33905 0.40 -1.8 152,151 + +1.4 152,158 + -1.2 152,881 + +0.4 152,885 + -2.0 152,999 + -0.0 153,012 + +1.2 153,012 + -0.4 153,013 - -1.8 153,013 - +0.3
Or see this region's nucleotide sequence