Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS30140 and AZOBR_RS30145 are separated by 149 nucleotides AZOBR_RS30145 and AZOBR_RS30150 are separated by 80 nucleotides
AZOBR_RS30140: AZOBR_RS30140 - multidrug transporter, at 101,150 to 102,022
_RS30140
AZOBR_RS30145: AZOBR_RS30145 - formate transporter, at 102,172 to 103,041
_RS30145
AZOBR_RS30150: AZOBR_RS30150 - pyruvate formate lyase-activating protein, at 103,122 to 103,889
_RS30150
Position (kb) 102
103
104 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 101.284 kb on - strand, within AZOBR_RS30140 at 101.340 kb on + strand, within AZOBR_RS30140 at 101.460 kb on + strand, within AZOBR_RS30140 at 101.461 kb on - strand, within AZOBR_RS30140 at 101.527 kb on - strand, within AZOBR_RS30140 at 101.638 kb on - strand, within AZOBR_RS30140 at 101.739 kb on + strand, within AZOBR_RS30140 at 101.739 kb on + strand, within AZOBR_RS30140 at 101.950 kb on - strand at 102.148 kb on + strand at 102.216 kb on - strand at 102.380 kb on + strand, within AZOBR_RS30145 at 102.381 kb on - strand, within AZOBR_RS30145 at 102.381 kb on - strand, within AZOBR_RS30145 at 102.381 kb on - strand, within AZOBR_RS30145 at 102.381 kb on - strand, within AZOBR_RS30145 at 102.572 kb on + strand, within AZOBR_RS30145 at 102.572 kb on + strand, within AZOBR_RS30145 at 102.572 kb on + strand, within AZOBR_RS30145 at 102.572 kb on + strand, within AZOBR_RS30145 at 102.573 kb on - strand, within AZOBR_RS30145 at 102.611 kb on + strand, within AZOBR_RS30145 at 102.941 kb on + strand, within AZOBR_RS30145 at 103.357 kb on + strand, within AZOBR_RS30150 at 103.357 kb on + strand, within AZOBR_RS30150 at 103.357 kb on + strand, within AZOBR_RS30150 at 103.358 kb on - strand, within AZOBR_RS30150 at 103.358 kb on - strand, within AZOBR_RS30150 at 103.444 kb on + strand, within AZOBR_RS30150 at 103.579 kb on + strand, within AZOBR_RS30150 at 103.580 kb on - strand, within AZOBR_RS30150 at 103.666 kb on + strand at 103.747 kb on + strand, within AZOBR_RS30150 at 103.747 kb on + strand, within AZOBR_RS30150 at 103.787 kb on - strand, within AZOBR_RS30150 at 103.787 kb on - strand at 103.787 kb on - strand, within AZOBR_RS30150 at 103.964 kb on + strand at 103.964 kb on + strand at 103.964 kb on + strand at 103.964 kb on + strand at 103.964 kb on + strand at 103.965 kb on - strand at 103.965 kb on - strand at 103.965 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 101,284 - AZOBR_RS30140 0.15 -0.1 101,340 + AZOBR_RS30140 0.22 -1.1 101,460 + AZOBR_RS30140 0.36 -0.5 101,461 - AZOBR_RS30140 0.36 +2.0 101,527 - AZOBR_RS30140 0.43 +0.2 101,638 - AZOBR_RS30140 0.56 -1.8 101,739 + AZOBR_RS30140 0.67 +1.1 101,739 + AZOBR_RS30140 0.67 -0.1 101,950 - -0.0 102,148 + +0.9 102,216 - -0.4 102,380 + AZOBR_RS30145 0.24 +1.2 102,381 - AZOBR_RS30145 0.24 +1.9 102,381 - AZOBR_RS30145 0.24 -0.8 102,381 - AZOBR_RS30145 0.24 +1.1 102,381 - AZOBR_RS30145 0.24 -2.4 102,572 + AZOBR_RS30145 0.46 -0.4 102,572 + AZOBR_RS30145 0.46 +0.4 102,572 + AZOBR_RS30145 0.46 -0.5 102,572 + AZOBR_RS30145 0.46 -1.9 102,573 - AZOBR_RS30145 0.46 +0.1 102,611 + AZOBR_RS30145 0.50 +3.0 102,941 + AZOBR_RS30145 0.88 +0.3 103,357 + AZOBR_RS30150 0.31 -2.2 103,357 + AZOBR_RS30150 0.31 -0.6 103,357 + AZOBR_RS30150 0.31 +1.1 103,358 - AZOBR_RS30150 0.31 -1.0 103,358 - AZOBR_RS30150 0.31 -0.0 103,444 + AZOBR_RS30150 0.42 +1.0 103,579 + AZOBR_RS30150 0.60 +2.5 103,580 - AZOBR_RS30150 0.60 -0.1 103,666 + +0.6 103,747 + AZOBR_RS30150 0.81 -2.7 103,747 + AZOBR_RS30150 0.81 +0.6 103,787 - AZOBR_RS30150 0.87 +1.1 103,787 - +1.5 103,787 - AZOBR_RS30150 0.87 -0.9 103,964 + +1.0 103,964 + -0.4 103,964 + -1.4 103,964 + -0.3 103,964 + +0.1 103,965 - -0.9 103,965 - -0.9 103,965 - -1.9
Or see this region's nucleotide sequence