Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29780 and AZOBR_RS29785 are separated by 112 nucleotides
AZOBR_RS29780: AZOBR_RS29780 - acyl-CoA dehydrogenase, at 29,971 to 31,659
_RS29780
AZOBR_RS29785: AZOBR_RS29785 - hypothetical protein, at 31,772 to 32,692
_RS29785
Position (kb) 29
30
31
32 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 29.093 kb on - strand at 29.357 kb on - strand at 29.357 kb on - strand at 29.357 kb on - strand at 29.357 kb on - strand at 29.554 kb on + strand at 29.624 kb on - strand at 30.721 kb on + strand, within AZOBR_RS29780 at 30.721 kb on + strand, within AZOBR_RS29780 at 30.918 kb on + strand, within AZOBR_RS29780 at 30.919 kb on - strand, within AZOBR_RS29780 at 30.919 kb on - strand, within AZOBR_RS29780 at 30.922 kb on + strand, within AZOBR_RS29780 at 30.922 kb on + strand, within AZOBR_RS29780 at 30.922 kb on + strand, within AZOBR_RS29780 at 30.923 kb on - strand, within AZOBR_RS29780 at 30.923 kb on - strand, within AZOBR_RS29780 at 31.135 kb on + strand, within AZOBR_RS29780 at 31.136 kb on - strand, within AZOBR_RS29780 at 31.301 kb on - strand, within AZOBR_RS29780 at 31.409 kb on - strand, within AZOBR_RS29780 at 31.590 kb on + strand at 31.727 kb on - strand at 31.794 kb on - strand at 31.916 kb on + strand, within AZOBR_RS29785 at 31.917 kb on - strand, within AZOBR_RS29785 at 31.917 kb on - strand, within AZOBR_RS29785 at 32.120 kb on + strand, within AZOBR_RS29785 at 32.120 kb on + strand, within AZOBR_RS29785 at 32.121 kb on - strand, within AZOBR_RS29785 at 32.121 kb on - strand, within AZOBR_RS29785 at 32.211 kb on - strand, within AZOBR_RS29785 at 32.211 kb on - strand, within AZOBR_RS29785 at 32.595 kb on + strand, within AZOBR_RS29785
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 29,093 - -0.7 29,357 - -1.0 29,357 - +1.5 29,357 - +1.1 29,357 - +0.2 29,554 + -3.0 29,624 - -0.5 30,721 + AZOBR_RS29780 0.44 -1.1 30,721 + AZOBR_RS29780 0.44 +0.1 30,918 + AZOBR_RS29780 0.56 +0.4 30,919 - AZOBR_RS29780 0.56 +1.4 30,919 - AZOBR_RS29780 0.56 -1.9 30,922 + AZOBR_RS29780 0.56 -0.4 30,922 + AZOBR_RS29780 0.56 +0.9 30,922 + AZOBR_RS29780 0.56 -1.2 30,923 - AZOBR_RS29780 0.56 -0.4 30,923 - AZOBR_RS29780 0.56 -1.0 31,135 + AZOBR_RS29780 0.69 +0.2 31,136 - AZOBR_RS29780 0.69 +1.5 31,301 - AZOBR_RS29780 0.79 +0.1 31,409 - AZOBR_RS29780 0.85 -1.1 31,590 + +0.4 31,727 - +0.4 31,794 - -2.1 31,916 + AZOBR_RS29785 0.16 +0.8 31,917 - AZOBR_RS29785 0.16 -0.1 31,917 - AZOBR_RS29785 0.16 +0.7 32,120 + AZOBR_RS29785 0.38 +3.2 32,120 + AZOBR_RS29785 0.38 +0.4 32,121 - AZOBR_RS29785 0.38 -0.4 32,121 - AZOBR_RS29785 0.38 -2.2 32,211 - AZOBR_RS29785 0.48 -1.5 32,211 - AZOBR_RS29785 0.48 -1.1 32,595 + AZOBR_RS29785 0.89 +0.1
Or see this region's nucleotide sequence