Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29545 and AZOBR_RS29550 are separated by 234 nucleotides AZOBR_RS29550 and AZOBR_RS29555 overlap by 4 nucleotides
AZOBR_RS29545: AZOBR_RS29545 - acriflavin resistance protein, at 750,548 to 753,712
_RS29545
AZOBR_RS29550: AZOBR_RS29550 - isochorismate synthase dhbC, at 753,947 to 755,152
_RS29550
AZOBR_RS29555: AZOBR_RS29555 - enterobactin synthase subunit E, at 755,149 to 756,780
_RS29555
Position (kb) 753
754
755
756 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 753.176 kb on + strand, within AZOBR_RS29545 at 753.176 kb on + strand, within AZOBR_RS29545 at 753.176 kb on + strand, within AZOBR_RS29545 at 753.177 kb on - strand, within AZOBR_RS29545 at 753.278 kb on + strand, within AZOBR_RS29545 at 753.278 kb on + strand, within AZOBR_RS29545 at 753.278 kb on + strand, within AZOBR_RS29545 at 753.279 kb on - strand, within AZOBR_RS29545 at 753.279 kb on - strand, within AZOBR_RS29545 at 753.558 kb on - strand at 753.558 kb on - strand at 753.609 kb on + strand at 753.711 kb on - strand at 753.810 kb on + strand at 753.810 kb on + strand at 753.810 kb on + strand at 753.810 kb on + strand at 753.957 kb on + strand at 754.043 kb on + strand at 754.044 kb on - strand at 754.233 kb on - strand, within AZOBR_RS29550 at 754.374 kb on + strand, within AZOBR_RS29550 at 754.374 kb on + strand, within AZOBR_RS29550 at 754.375 kb on - strand, within AZOBR_RS29550 at 754.463 kb on + strand, within AZOBR_RS29550 at 754.463 kb on + strand, within AZOBR_RS29550 at 754.463 kb on + strand, within AZOBR_RS29550 at 754.464 kb on - strand, within AZOBR_RS29550 at 754.464 kb on - strand, within AZOBR_RS29550 at 754.487 kb on + strand, within AZOBR_RS29550 at 754.658 kb on + strand, within AZOBR_RS29550 at 754.911 kb on - strand, within AZOBR_RS29550 at 755.007 kb on - strand, within AZOBR_RS29550 at 755.325 kb on - strand, within AZOBR_RS29555 at 755.779 kb on + strand, within AZOBR_RS29555 at 755.780 kb on - strand, within AZOBR_RS29555 at 755.780 kb on - strand, within AZOBR_RS29555 at 755.780 kb on - strand, within AZOBR_RS29555 at 755.780 kb on - strand, within AZOBR_RS29555
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 753,176 + AZOBR_RS29545 0.83 +0.5 753,176 + AZOBR_RS29545 0.83 +0.6 753,176 + AZOBR_RS29545 0.83 +0.7 753,177 - AZOBR_RS29545 0.83 -2.0 753,278 + AZOBR_RS29545 0.86 -0.0 753,278 + AZOBR_RS29545 0.86 +2.1 753,278 + AZOBR_RS29545 0.86 -2.1 753,279 - AZOBR_RS29545 0.86 +0.0 753,279 - AZOBR_RS29545 0.86 -3.3 753,558 - -1.5 753,558 - +2.5 753,609 + +1.3 753,711 - +0.5 753,810 + -0.6 753,810 + -0.3 753,810 + -1.7 753,810 + -1.0 753,957 + -1.6 754,043 + +0.5 754,044 - +0.5 754,233 - AZOBR_RS29550 0.24 +1.3 754,374 + AZOBR_RS29550 0.35 -0.4 754,374 + AZOBR_RS29550 0.35 -0.4 754,375 - AZOBR_RS29550 0.35 -2.0 754,463 + AZOBR_RS29550 0.43 +0.3 754,463 + AZOBR_RS29550 0.43 +1.2 754,463 + AZOBR_RS29550 0.43 -2.4 754,464 - AZOBR_RS29550 0.43 +0.9 754,464 - AZOBR_RS29550 0.43 +2.5 754,487 + AZOBR_RS29550 0.45 +0.2 754,658 + AZOBR_RS29550 0.59 -0.2 754,911 - AZOBR_RS29550 0.80 +0.2 755,007 - AZOBR_RS29550 0.88 +0.7 755,325 - AZOBR_RS29555 0.11 -1.4 755,779 + AZOBR_RS29555 0.39 -1.4 755,780 - AZOBR_RS29555 0.39 -1.9 755,780 - AZOBR_RS29555 0.39 +0.3 755,780 - AZOBR_RS29555 0.39 -2.2 755,780 - AZOBR_RS29555 0.39 -0.5
Or see this region's nucleotide sequence