Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28615 and AZOBR_RS28620 are separated by 278 nucleotides AZOBR_RS28620 and AZOBR_RS28625 overlap by 4 nucleotides AZOBR_RS28625 and AZOBR_RS28630 are separated by 6 nucleotides AZOBR_RS28630 and AZOBR_RS28635 overlap by 4 nucleotides AZOBR_RS28635 and AZOBR_RS28640 are separated by 209 nucleotides AZOBR_RS28640 and AZOBR_RS28645 overlap by 4 nucleotides
AZOBR_RS28615: AZOBR_RS28615 - hypothetical protein, at 594,349 to 594,717
_RS28615
AZOBR_RS28620: AZOBR_RS28620 - hypothetical protein, at 594,996 to 595,298
_RS28620
AZOBR_RS28625: AZOBR_RS28625 - hypothetical protein, at 595,295 to 595,534
_RS28625
AZOBR_RS28630: AZOBR_RS28630 - hypothetical protein, at 595,541 to 595,846
_RS28630
AZOBR_RS28635: AZOBR_RS28635 - hypothetical protein, at 595,843 to 596,118
_RS28635
AZOBR_RS28640: AZOBR_RS28640 - hypothetical protein, at 596,328 to 596,585
_RS28640
AZOBR_RS28645: AZOBR_RS28645 - putative transcriptional regulator, at 596,582 to 596,854
_RS28645
Position (kb) 595
596 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 594.608 kb on + strand, within AZOBR_RS28615 at 594.609 kb on - strand, within AZOBR_RS28615 at 594.609 kb on - strand, within AZOBR_RS28615 at 595.223 kb on + strand, within AZOBR_RS28620 at 595.224 kb on - strand, within AZOBR_RS28620 at 595.239 kb on + strand, within AZOBR_RS28620 at 595.301 kb on + strand at 595.301 kb on + strand at 595.301 kb on + strand at 595.301 kb on + strand at 595.301 kb on + strand at 595.301 kb on + strand at 595.301 kb on + strand at 595.302 kb on - strand at 595.302 kb on - strand at 595.302 kb on - strand at 595.312 kb on + strand at 595.313 kb on - strand at 595.500 kb on + strand, within AZOBR_RS28625 at 595.803 kb on + strand, within AZOBR_RS28630 at 595.803 kb on + strand, within AZOBR_RS28630 at 595.804 kb on - strand, within AZOBR_RS28630 at 595.804 kb on - strand, within AZOBR_RS28630 at 595.911 kb on - strand, within AZOBR_RS28635 at 595.911 kb on - strand, within AZOBR_RS28635 at 596.045 kb on + strand, within AZOBR_RS28635 at 596.045 kb on + strand, within AZOBR_RS28635 at 596.045 kb on + strand, within AZOBR_RS28635 at 596.046 kb on - strand, within AZOBR_RS28635 at 596.195 kb on + strand at 596.303 kb on + strand at 596.303 kb on + strand at 596.303 kb on + strand at 596.303 kb on + strand at 596.304 kb on - strand at 596.304 kb on - strand at 596.304 kb on - strand at 596.304 kb on - strand at 596.304 kb on - strand at 596.428 kb on + strand, within AZOBR_RS28640 at 596.428 kb on + strand, within AZOBR_RS28640 at 596.428 kb on + strand, within AZOBR_RS28640 at 596.428 kb on + strand, within AZOBR_RS28640 at 596.429 kb on - strand, within AZOBR_RS28640 at 596.429 kb on - strand, within AZOBR_RS28640 at 596.429 kb on - strand, within AZOBR_RS28640 at 596.429 kb on - strand, within AZOBR_RS28640 at 596.429 kb on - strand, within AZOBR_RS28640 at 596.429 kb on - strand, within AZOBR_RS28640 at 596.429 kb on - strand, within AZOBR_RS28640 at 596.429 kb on - strand, within AZOBR_RS28640 at 596.429 kb on - strand, within AZOBR_RS28640 at 596.834 kb on + strand at 596.835 kb on - strand at 596.835 kb on - strand at 596.835 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 594,608 + AZOBR_RS28615 0.70 +1.3 594,609 - AZOBR_RS28615 0.70 +1.3 594,609 - AZOBR_RS28615 0.70 +0.9 595,223 + AZOBR_RS28620 0.75 -0.4 595,224 - AZOBR_RS28620 0.75 -1.1 595,239 + AZOBR_RS28620 0.80 +0.9 595,301 + -1.6 595,301 + +0.9 595,301 + -1.6 595,301 + +0.5 595,301 + +0.5 595,301 + +0.9 595,301 + -0.1 595,302 - -2.8 595,302 - -1.1 595,302 - -2.0 595,312 + -0.8 595,313 - -0.1 595,500 + AZOBR_RS28625 0.85 -1.8 595,803 + AZOBR_RS28630 0.86 +2.3 595,803 + AZOBR_RS28630 0.86 -1.7 595,804 - AZOBR_RS28630 0.86 -0.8 595,804 - AZOBR_RS28630 0.86 +0.6 595,911 - AZOBR_RS28635 0.25 +1.1 595,911 - AZOBR_RS28635 0.25 -0.1 596,045 + AZOBR_RS28635 0.73 +0.1 596,045 + AZOBR_RS28635 0.73 -0.5 596,045 + AZOBR_RS28635 0.73 +0.9 596,046 - AZOBR_RS28635 0.74 +2.0 596,195 + +0.4 596,303 + -2.4 596,303 + +0.4 596,303 + -3.0 596,303 + +0.2 596,304 - +0.9 596,304 - +1.0 596,304 - +0.7 596,304 - -0.3 596,304 - -1.6 596,428 + AZOBR_RS28640 0.39 +0.9 596,428 + AZOBR_RS28640 0.39 -0.4 596,428 + AZOBR_RS28640 0.39 +0.6 596,428 + AZOBR_RS28640 0.39 -0.8 596,429 - AZOBR_RS28640 0.39 -0.6 596,429 - AZOBR_RS28640 0.39 +0.1 596,429 - AZOBR_RS28640 0.39 +1.5 596,429 - AZOBR_RS28640 0.39 +1.4 596,429 - AZOBR_RS28640 0.39 +0.2 596,429 - AZOBR_RS28640 0.39 -0.9 596,429 - AZOBR_RS28640 0.39 +0.5 596,429 - AZOBR_RS28640 0.39 -2.5 596,429 - AZOBR_RS28640 0.39 -1.0 596,834 + +0.9 596,835 - -1.5 596,835 - -1.3 596,835 - -2.3
Or see this region's nucleotide sequence