Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27305 and AZOBR_RS27310 are separated by 50 nucleotides AZOBR_RS27310 and AZOBR_RS27315 are separated by 200 nucleotides AZOBR_RS27315 and AZOBR_RS27320 are separated by 26 nucleotides
AZOBR_RS27305: AZOBR_RS27305 - hypothetical protein, at 269,088 to 270,512
_RS27305
AZOBR_RS27310: AZOBR_RS27310 - chitinase, at 270,563 to 271,510
_RS27310
AZOBR_RS27315: AZOBR_RS27315 - RNA polymerase sigma 70, at 271,711 to 272,217
_RS27315
AZOBR_RS27320: AZOBR_RS27320 - hypothetical protein, at 272,244 to 272,639
_RS27320
Position (kb) 270
271
272 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 269.604 kb on + strand, within AZOBR_RS27305 at 269.604 kb on + strand, within AZOBR_RS27305 at 270.288 kb on + strand, within AZOBR_RS27305 at 270.310 kb on - strand, within AZOBR_RS27305 at 270.426 kb on + strand at 270.426 kb on + strand at 270.427 kb on - strand at 270.427 kb on - strand at 270.427 kb on - strand at 270.427 kb on - strand at 270.446 kb on - strand at 270.626 kb on + strand at 270.627 kb on - strand at 270.764 kb on + strand, within AZOBR_RS27310 at 270.860 kb on + strand, within AZOBR_RS27310 at 270.860 kb on + strand, within AZOBR_RS27310 at 270.861 kb on - strand, within AZOBR_RS27310 at 270.861 kb on - strand, within AZOBR_RS27310 at 270.861 kb on - strand, within AZOBR_RS27310 at 270.861 kb on - strand, within AZOBR_RS27310 at 271.206 kb on - strand, within AZOBR_RS27310 at 271.206 kb on - strand, within AZOBR_RS27310 at 271.206 kb on - strand, within AZOBR_RS27310 at 271.206 kb on - strand, within AZOBR_RS27310 at 271.206 kb on - strand, within AZOBR_RS27310 at 271.250 kb on + strand, within AZOBR_RS27310 at 271.322 kb on + strand, within AZOBR_RS27310 at 271.323 kb on - strand, within AZOBR_RS27310 at 271.391 kb on + strand, within AZOBR_RS27310 at 271.391 kb on + strand, within AZOBR_RS27310 at 271.619 kb on + strand at 271.619 kb on + strand at 271.759 kb on + strand at 271.760 kb on - strand at 271.834 kb on + strand, within AZOBR_RS27315 at 271.834 kb on + strand, within AZOBR_RS27315 at 271.834 kb on + strand, within AZOBR_RS27315 at 271.834 kb on + strand, within AZOBR_RS27315 at 271.835 kb on - strand, within AZOBR_RS27315 at 271.835 kb on - strand, within AZOBR_RS27315 at 271.835 kb on - strand, within AZOBR_RS27315 at 271.835 kb on - strand, within AZOBR_RS27315 at 271.888 kb on + strand, within AZOBR_RS27315 at 271.889 kb on - strand, within AZOBR_RS27315 at 271.889 kb on - strand, within AZOBR_RS27315 at 271.889 kb on - strand, within AZOBR_RS27315 at 271.889 kb on - strand, within AZOBR_RS27315 at 271.889 kb on - strand, within AZOBR_RS27315 at 271.894 kb on + strand, within AZOBR_RS27315
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 269,604 + AZOBR_RS27305 0.36 +0.4 269,604 + AZOBR_RS27305 0.36 -2.8 270,288 + AZOBR_RS27305 0.84 +1.3 270,310 - AZOBR_RS27305 0.86 +0.8 270,426 + +2.8 270,426 + -2.5 270,427 - -0.5 270,427 - +0.9 270,427 - +0.7 270,427 - -0.7 270,446 - -1.7 270,626 + -0.7 270,627 - -0.5 270,764 + AZOBR_RS27310 0.21 +0.4 270,860 + AZOBR_RS27310 0.31 -2.7 270,860 + AZOBR_RS27310 0.31 -1.4 270,861 - AZOBR_RS27310 0.31 -1.4 270,861 - AZOBR_RS27310 0.31 -3.1 270,861 - AZOBR_RS27310 0.31 -0.8 270,861 - AZOBR_RS27310 0.31 +2.0 271,206 - AZOBR_RS27310 0.68 +0.4 271,206 - AZOBR_RS27310 0.68 -0.5 271,206 - AZOBR_RS27310 0.68 +0.2 271,206 - AZOBR_RS27310 0.68 -0.5 271,206 - AZOBR_RS27310 0.68 +0.2 271,250 + AZOBR_RS27310 0.72 +0.4 271,322 + AZOBR_RS27310 0.80 +2.4 271,323 - AZOBR_RS27310 0.80 +1.2 271,391 + AZOBR_RS27310 0.87 -0.2 271,391 + AZOBR_RS27310 0.87 -0.4 271,619 + +1.8 271,619 + +0.2 271,759 + -0.7 271,760 - -1.6 271,834 + AZOBR_RS27315 0.24 -0.7 271,834 + AZOBR_RS27315 0.24 -3.1 271,834 + AZOBR_RS27315 0.24 -0.1 271,834 + AZOBR_RS27315 0.24 -0.8 271,835 - AZOBR_RS27315 0.24 -2.3 271,835 - AZOBR_RS27315 0.24 +0.5 271,835 - AZOBR_RS27315 0.24 +0.7 271,835 - AZOBR_RS27315 0.24 +0.2 271,888 + AZOBR_RS27315 0.35 +0.2 271,889 - AZOBR_RS27315 0.35 -1.2 271,889 - AZOBR_RS27315 0.35 +0.6 271,889 - AZOBR_RS27315 0.35 +1.4 271,889 - AZOBR_RS27315 0.35 +0.5 271,889 - AZOBR_RS27315 0.35 -0.3 271,894 + AZOBR_RS27315 0.36 -2.4
Or see this region's nucleotide sequence