Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23490 and AZOBR_RS23495 are separated by 31 nucleotides AZOBR_RS23495 and AZOBR_RS23500 are separated by 219 nucleotides AZOBR_RS23500 and AZOBR_RS23505 overlap by 4 nucleotides
AZOBR_RS23490: AZOBR_RS23490 - hypothetical protein, at 300,268 to 300,843
_RS23490
AZOBR_RS23495: AZOBR_RS23495 - lipoprotein putative (fragment), at 300,875 to 301,486
_RS23495
AZOBR_RS23500: AZOBR_RS23500 - transcriptional regulator IclR family, at 301,706 to 302,494
_RS23500
AZOBR_RS23505: AZOBR_RS23505 - N-formimino-L-glutamate deiminase, at 302,491 to 303,879
_RS23505
Position (kb) 301
302
303 Strain fitness (log2 ratio) -2
-1
0
1
2 at 300.863 kb on + strand at 300.863 kb on + strand at 300.863 kb on + strand at 300.863 kb on + strand at 300.864 kb on - strand at 300.864 kb on - strand at 300.864 kb on - strand at 301.171 kb on - strand, within AZOBR_RS23495 at 301.300 kb on - strand, within AZOBR_RS23495 at 301.300 kb on - strand, within AZOBR_RS23495 at 301.300 kb on - strand, within AZOBR_RS23495 at 301.581 kb on - strand at 302.007 kb on + strand, within AZOBR_RS23500 at 302.007 kb on + strand, within AZOBR_RS23500 at 302.008 kb on - strand, within AZOBR_RS23500 at 302.008 kb on - strand, within AZOBR_RS23500 at 302.133 kb on + strand, within AZOBR_RS23500 at 302.139 kb on + strand, within AZOBR_RS23500 at 302.140 kb on - strand, within AZOBR_RS23500 at 302.140 kb on - strand, within AZOBR_RS23500 at 302.140 kb on - strand, within AZOBR_RS23500 at 302.140 kb on - strand, within AZOBR_RS23500 at 302.140 kb on - strand, within AZOBR_RS23500 at 302.212 kb on - strand, within AZOBR_RS23500 at 302.212 kb on - strand, within AZOBR_RS23500 at 302.250 kb on + strand, within AZOBR_RS23500 at 302.250 kb on + strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.319 kb on + strand, within AZOBR_RS23500 at 302.320 kb on - strand, within AZOBR_RS23500 at 302.469 kb on + strand at 302.469 kb on + strand at 302.469 kb on + strand at 302.469 kb on + strand at 302.469 kb on + strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.633 kb on + strand, within AZOBR_RS23505 at 302.633 kb on + strand, within AZOBR_RS23505 at 302.633 kb on + strand, within AZOBR_RS23505 at 302.634 kb on - strand, within AZOBR_RS23505 at 302.634 kb on - strand, within AZOBR_RS23505 at 302.634 kb on - strand at 303.405 kb on - strand, within AZOBR_RS23505 at 303.405 kb on - strand, within AZOBR_RS23505 at 303.405 kb on - strand, within AZOBR_RS23505 at 303.489 kb on - strand, within AZOBR_RS23505 at 303.489 kb on - strand, within AZOBR_RS23505
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 300,863 + -2.0 300,863 + -2.6 300,863 + -1.1 300,863 + +0.1 300,864 - +1.2 300,864 - -0.6 300,864 - +1.4 301,171 - AZOBR_RS23495 0.48 +0.1 301,300 - AZOBR_RS23495 0.69 +0.1 301,300 - AZOBR_RS23495 0.69 -0.3 301,300 - AZOBR_RS23495 0.69 +0.6 301,581 - -2.2 302,007 + AZOBR_RS23500 0.38 +1.5 302,007 + AZOBR_RS23500 0.38 +0.6 302,008 - AZOBR_RS23500 0.38 +1.4 302,008 - AZOBR_RS23500 0.38 +1.8 302,133 + AZOBR_RS23500 0.54 +2.2 302,139 + AZOBR_RS23500 0.55 +0.4 302,140 - AZOBR_RS23500 0.55 +1.8 302,140 - AZOBR_RS23500 0.55 +0.7 302,140 - AZOBR_RS23500 0.55 +1.0 302,140 - AZOBR_RS23500 0.55 +1.2 302,140 - AZOBR_RS23500 0.55 +1.3 302,212 - AZOBR_RS23500 0.64 +0.3 302,212 - AZOBR_RS23500 0.64 +0.7 302,250 + AZOBR_RS23500 0.69 +0.9 302,250 + AZOBR_RS23500 0.69 +1.0 302,251 - AZOBR_RS23500 0.69 +0.8 302,251 - AZOBR_RS23500 0.69 +1.2 302,251 - AZOBR_RS23500 0.69 -1.2 302,251 - AZOBR_RS23500 0.69 +0.5 302,251 - AZOBR_RS23500 0.69 +0.3 302,251 - AZOBR_RS23500 0.69 +1.0 302,319 + AZOBR_RS23500 0.78 +2.0 302,320 - AZOBR_RS23500 0.78 +1.2 302,469 + +1.3 302,469 + +0.4 302,469 + +1.6 302,469 + +1.5 302,469 + +1.2 302,470 - +1.3 302,470 - +1.4 302,470 - +1.4 302,470 - +1.2 302,470 - +1.0 302,470 - +1.2 302,470 - +0.7 302,470 - +1.4 302,633 + AZOBR_RS23505 0.10 +1.3 302,633 + AZOBR_RS23505 0.10 +1.4 302,633 + AZOBR_RS23505 0.10 +1.1 302,634 - AZOBR_RS23505 0.10 -0.4 302,634 - AZOBR_RS23505 0.10 +0.5 302,634 - +2.4 303,405 - AZOBR_RS23505 0.66 +0.7 303,405 - AZOBR_RS23505 0.66 -0.1 303,405 - AZOBR_RS23505 0.66 +0.6 303,489 - AZOBR_RS23505 0.72 -0.2 303,489 - AZOBR_RS23505 0.72 +0.5
Or see this region's nucleotide sequence