Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23060 and AZOBR_RS23065 are separated by 31 nucleotides AZOBR_RS23065 and AZOBR_RS23070 are separated by 134 nucleotides
AZOBR_RS23060: AZOBR_RS23060 - hypothetical protein, at 188,857 to 189,729
_RS23060
AZOBR_RS23065: AZOBR_RS23065 - LacI family transcription regulator, at 189,761 to 190,846
_RS23065
AZOBR_RS23070: AZOBR_RS23070 - ABC transporter substrate-binding protein, at 190,981 to 192,036
_RS23070
Position (kb) 189
190
191 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 188.861 kb on + strand at 188.861 kb on + strand at 188.862 kb on - strand at 188.862 kb on - strand at 188.862 kb on - strand at 188.862 kb on - strand at 189.166 kb on + strand, within AZOBR_RS23060 at 189.167 kb on - strand, within AZOBR_RS23060 at 189.676 kb on + strand at 190.044 kb on + strand, within AZOBR_RS23065 at 190.044 kb on + strand, within AZOBR_RS23065 at 190.044 kb on + strand, within AZOBR_RS23065 at 190.044 kb on + strand, within AZOBR_RS23065 at 190.044 kb on + strand, within AZOBR_RS23065 at 190.045 kb on - strand, within AZOBR_RS23065 at 190.045 kb on - strand, within AZOBR_RS23065 at 190.045 kb on - strand, within AZOBR_RS23065 at 190.045 kb on - strand, within AZOBR_RS23065 at 190.314 kb on + strand, within AZOBR_RS23065 at 190.315 kb on - strand, within AZOBR_RS23065 at 190.662 kb on + strand, within AZOBR_RS23065 at 190.663 kb on - strand, within AZOBR_RS23065 at 190.663 kb on - strand, within AZOBR_RS23065 at 190.663 kb on - strand, within AZOBR_RS23065 at 190.663 kb on - strand, within AZOBR_RS23065 at 190.663 kb on - strand, within AZOBR_RS23065 at 191.128 kb on + strand, within AZOBR_RS23070 at 191.630 kb on - strand, within AZOBR_RS23070 at 191.630 kb on - strand, within AZOBR_RS23070 at 191.630 kb on - strand, within AZOBR_RS23070 at 191.702 kb on - strand, within AZOBR_RS23070 at 191.702 kb on - strand, within AZOBR_RS23070
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 188,861 + +0.3 188,861 + -0.1 188,862 - +0.4 188,862 - +0.4 188,862 - +1.4 188,862 - +0.2 189,166 + AZOBR_RS23060 0.35 +0.5 189,167 - AZOBR_RS23060 0.36 -1.0 189,676 + +1.0 190,044 + AZOBR_RS23065 0.26 +0.2 190,044 + AZOBR_RS23065 0.26 +2.1 190,044 + AZOBR_RS23065 0.26 -2.8 190,044 + AZOBR_RS23065 0.26 +0.9 190,044 + AZOBR_RS23065 0.26 +1.4 190,045 - AZOBR_RS23065 0.26 -0.4 190,045 - AZOBR_RS23065 0.26 -0.8 190,045 - AZOBR_RS23065 0.26 -1.9 190,045 - AZOBR_RS23065 0.26 -0.7 190,314 + AZOBR_RS23065 0.51 -1.2 190,315 - AZOBR_RS23065 0.51 -3.5 190,662 + AZOBR_RS23065 0.83 +1.7 190,663 - AZOBR_RS23065 0.83 +0.7 190,663 - AZOBR_RS23065 0.83 -0.7 190,663 - AZOBR_RS23065 0.83 +0.9 190,663 - AZOBR_RS23065 0.83 -0.8 190,663 - AZOBR_RS23065 0.83 +0.6 191,128 + AZOBR_RS23070 0.14 +0.7 191,630 - AZOBR_RS23070 0.61 -0.4 191,630 - AZOBR_RS23070 0.61 -0.1 191,630 - AZOBR_RS23070 0.61 +0.3 191,702 - AZOBR_RS23070 0.68 -3.6 191,702 - AZOBR_RS23070 0.68 +0.0
Or see this region's nucleotide sequence