Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS19675 and AZOBR_RS19680 are separated by 258 nucleotides AZOBR_RS19680 and AZOBR_RS19685 overlap by 4 nucleotides AZOBR_RS19685 and AZOBR_RS19690 are separated by 18 nucleotides
AZOBR_RS19675: AZOBR_RS19675 - CoA transferase, at 1,183,841 to 1,185,043
_RS19675
AZOBR_RS19680: AZOBR_RS19680 - membrane protein, at 1,185,302 to 1,186,228
_RS19680
AZOBR_RS19685: AZOBR_RS19685 - hypothetical protein, at 1,186,225 to 1,186,605
_RS19685
AZOBR_RS19690: AZOBR_RS19690 - hypothetical protein, at 1,186,624 to 1,187,934
_RS19690
Position (kb) 1185
1186
1187 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1184.375 kb on + strand, within AZOBR_RS19675 at 1184.376 kb on - strand, within AZOBR_RS19675 at 1184.495 kb on + strand, within AZOBR_RS19675 at 1184.495 kb on + strand, within AZOBR_RS19675 at 1184.495 kb on + strand, within AZOBR_RS19675 at 1184.496 kb on - strand, within AZOBR_RS19675 at 1184.555 kb on + strand, within AZOBR_RS19675 at 1184.669 kb on + strand, within AZOBR_RS19675 at 1184.912 kb on + strand, within AZOBR_RS19675 at 1185.108 kb on - strand at 1185.228 kb on + strand at 1185.229 kb on - strand at 1185.230 kb on + strand at 1185.230 kb on + strand at 1185.230 kb on + strand at 1185.230 kb on + strand at 1185.230 kb on + strand at 1185.230 kb on + strand at 1185.230 kb on + strand at 1185.231 kb on - strand at 1185.231 kb on - strand at 1185.231 kb on - strand at 1185.231 kb on - strand at 1185.231 kb on - strand at 1185.231 kb on - strand at 1185.231 kb on - strand at 1185.231 kb on - strand at 1185.231 kb on - strand at 1185.231 kb on - strand at 1185.629 kb on + strand, within AZOBR_RS19680 at 1185.629 kb on + strand, within AZOBR_RS19680 at 1185.629 kb on + strand, within AZOBR_RS19680 at 1185.630 kb on - strand, within AZOBR_RS19680 at 1185.630 kb on - strand, within AZOBR_RS19680 at 1185.630 kb on - strand, within AZOBR_RS19680 at 1185.630 kb on - strand, within AZOBR_RS19680 at 1185.630 kb on - strand, within AZOBR_RS19680 at 1185.630 kb on - strand, within AZOBR_RS19680 at 1185.630 kb on - strand, within AZOBR_RS19680 at 1186.047 kb on - strand, within AZOBR_RS19680 at 1186.352 kb on + strand, within AZOBR_RS19685 at 1186.352 kb on + strand, within AZOBR_RS19685 at 1186.352 kb on + strand, within AZOBR_RS19685 at 1186.523 kb on + strand, within AZOBR_RS19685 at 1186.586 kb on + strand at 1186.586 kb on + strand at 1186.587 kb on - strand at 1186.712 kb on + strand at 1186.792 kb on + strand, within AZOBR_RS19690
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,184,375 + AZOBR_RS19675 0.44 +0.4 1,184,376 - AZOBR_RS19675 0.44 -1.6 1,184,495 + AZOBR_RS19675 0.54 -1.0 1,184,495 + AZOBR_RS19675 0.54 -2.8 1,184,495 + AZOBR_RS19675 0.54 -1.2 1,184,496 - AZOBR_RS19675 0.54 +1.9 1,184,555 + AZOBR_RS19675 0.59 +0.4 1,184,669 + AZOBR_RS19675 0.69 -2.3 1,184,912 + AZOBR_RS19675 0.89 +1.1 1,185,108 - +0.4 1,185,228 + +0.7 1,185,229 - -0.2 1,185,230 + -1.5 1,185,230 + +0.6 1,185,230 + -1.1 1,185,230 + +0.5 1,185,230 + +0.3 1,185,230 + +0.7 1,185,230 + -1.6 1,185,231 - -0.2 1,185,231 - -0.1 1,185,231 - -0.9 1,185,231 - +0.3 1,185,231 - -1.1 1,185,231 - +0.5 1,185,231 - +0.8 1,185,231 - -0.7 1,185,231 - +1.3 1,185,231 - -0.6 1,185,629 + AZOBR_RS19680 0.35 -2.0 1,185,629 + AZOBR_RS19680 0.35 -2.2 1,185,629 + AZOBR_RS19680 0.35 +0.7 1,185,630 - AZOBR_RS19680 0.35 +0.1 1,185,630 - AZOBR_RS19680 0.35 +0.5 1,185,630 - AZOBR_RS19680 0.35 +0.4 1,185,630 - AZOBR_RS19680 0.35 -0.7 1,185,630 - AZOBR_RS19680 0.35 -2.2 1,185,630 - AZOBR_RS19680 0.35 -1.6 1,185,630 - AZOBR_RS19680 0.35 -0.7 1,186,047 - AZOBR_RS19680 0.80 +1.1 1,186,352 + AZOBR_RS19685 0.33 -0.9 1,186,352 + AZOBR_RS19685 0.33 -1.0 1,186,352 + AZOBR_RS19685 0.33 +0.7 1,186,523 + AZOBR_RS19685 0.78 -1.3 1,186,586 + -1.2 1,186,586 + -0.3 1,186,587 - -3.0 1,186,712 + -0.1 1,186,792 + AZOBR_RS19690 0.13 -0.9
Or see this region's nucleotide sequence