Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS16215 and AZOBR_RS16220 are separated by 166 nucleotides AZOBR_RS16220 and AZOBR_RS16225 are separated by 264 nucleotides
AZOBR_RS16215: AZOBR_RS16215 - aspartyl-tRNA synthetase, at 386,405 to 388,234
_RS16215
AZOBR_RS16220: AZOBR_RS16220 - ribonuclease D, at 388,401 to 389,567
_RS16220
AZOBR_RS16225: AZOBR_RS16225 - hypothetical protein, at 389,832 to 391,121
_RS16225
Position (kb) 388
389
390 Strain fitness (log2 ratio) -2
-1
0
1
2 at 388.389 kb on + strand at 388.389 kb on + strand at 388.465 kb on - strand at 388.465 kb on - strand at 388.465 kb on - strand at 388.503 kb on + strand at 388.504 kb on - strand at 388.504 kb on - strand at 388.849 kb on - strand, within AZOBR_RS16220 at 388.849 kb on - strand, within AZOBR_RS16220 at 388.884 kb on + strand, within AZOBR_RS16220 at 388.971 kb on + strand, within AZOBR_RS16220 at 389.565 kb on + strand at 389.566 kb on - strand at 389.716 kb on + strand at 389.719 kb on + strand at 390.096 kb on + strand, within AZOBR_RS16225 at 390.096 kb on + strand, within AZOBR_RS16225 at 390.096 kb on + strand, within AZOBR_RS16225 at 390.141 kb on + strand, within AZOBR_RS16225 at 390.142 kb on - strand, within AZOBR_RS16225 at 390.235 kb on - strand, within AZOBR_RS16225 at 390.252 kb on + strand, within AZOBR_RS16225 at 390.475 kb on - strand, within AZOBR_RS16225 at 390.475 kb on - strand, within AZOBR_RS16225 at 390.486 kb on + strand, within AZOBR_RS16225 at 390.487 kb on - strand, within AZOBR_RS16225 at 390.487 kb on - strand, within AZOBR_RS16225 at 390.487 kb on - strand, within AZOBR_RS16225 at 390.487 kb on - strand, within AZOBR_RS16225 at 390.529 kb on - strand, within AZOBR_RS16225 at 390.561 kb on + strand, within AZOBR_RS16225 at 390.561 kb on + strand, within AZOBR_RS16225 at 390.561 kb on + strand, within AZOBR_RS16225 at 390.561 kb on + strand, within AZOBR_RS16225 at 390.562 kb on - strand, within AZOBR_RS16225
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 388,389 + -0.4 388,389 + -0.6 388,465 - -1.5 388,465 - -2.2 388,465 - -0.0 388,503 + -0.9 388,504 - -0.3 388,504 - +0.8 388,849 - AZOBR_RS16220 0.38 -1.9 388,849 - AZOBR_RS16220 0.38 +1.5 388,884 + AZOBR_RS16220 0.41 -1.3 388,971 + AZOBR_RS16220 0.49 +2.3 389,565 + +2.5 389,566 - +1.5 389,716 + +1.3 389,719 + -0.3 390,096 + AZOBR_RS16225 0.20 -0.7 390,096 + AZOBR_RS16225 0.20 +0.1 390,096 + AZOBR_RS16225 0.20 +1.0 390,141 + AZOBR_RS16225 0.24 +1.5 390,142 - AZOBR_RS16225 0.24 +2.7 390,235 - AZOBR_RS16225 0.31 +0.2 390,252 + AZOBR_RS16225 0.33 -0.4 390,475 - AZOBR_RS16225 0.50 +1.1 390,475 - AZOBR_RS16225 0.50 +2.1 390,486 + AZOBR_RS16225 0.51 +0.7 390,487 - AZOBR_RS16225 0.51 +0.4 390,487 - AZOBR_RS16225 0.51 +1.2 390,487 - AZOBR_RS16225 0.51 +1.4 390,487 - AZOBR_RS16225 0.51 +0.4 390,529 - AZOBR_RS16225 0.54 -1.6 390,561 + AZOBR_RS16225 0.57 -0.0 390,561 + AZOBR_RS16225 0.57 +2.2 390,561 + AZOBR_RS16225 0.57 -0.6 390,561 + AZOBR_RS16225 0.57 +0.7 390,562 - AZOBR_RS16225 0.57 -0.9
Or see this region's nucleotide sequence