Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS05885 and AZOBR_RS05890 overlap by 4 nucleotides AZOBR_RS05890 and AZOBR_RS05895 are separated by 35 nucleotides AZOBR_RS05895 and AZOBR_RS05900 are separated by 291 nucleotides AZOBR_RS05900 and AZOBR_RS05905 overlap by 7 nucleotides
AZOBR_RS05885: AZOBR_RS05885 - hypothetical protein, at 1,249,640 to 1,250,398
_RS05885
AZOBR_RS05890: AZOBR_RS05890 - 4-carboxymuconolactone decarboxylase, at 1,250,395 to 1,250,802
_RS05890
AZOBR_RS05895: AZOBR_RS05895 - hypothetical protein, at 1,250,838 to 1,251,209
_RS05895
AZOBR_RS05900: AZOBR_RS05900 - hypothetical protein, at 1,251,501 to 1,251,776
_RS05900
AZOBR_RS05905: AZOBR_RS05905 - putative 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase), at 1,251,770 to 1,252,561
_RS05905
Position (kb) 1250
1251
1252 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1250.413 kb on + strand at 1250.413 kb on + strand at 1250.414 kb on - strand at 1250.414 kb on - strand at 1250.414 kb on - strand at 1250.498 kb on + strand, within AZOBR_RS05890 at 1250.663 kb on + strand, within AZOBR_RS05890 at 1250.663 kb on + strand, within AZOBR_RS05890 at 1250.663 kb on + strand, within AZOBR_RS05890 at 1250.663 kb on + strand, within AZOBR_RS05890 at 1250.663 kb on + strand, within AZOBR_RS05890 at 1250.663 kb on + strand, within AZOBR_RS05890 at 1250.663 kb on + strand, within AZOBR_RS05890 at 1250.664 kb on - strand, within AZOBR_RS05890 at 1250.845 kb on + strand at 1250.846 kb on - strand at 1250.846 kb on - strand at 1250.884 kb on + strand, within AZOBR_RS05895 at 1250.885 kb on - strand, within AZOBR_RS05895 at 1250.944 kb on + strand, within AZOBR_RS05895 at 1251.013 kb on + strand, within AZOBR_RS05895 at 1251.013 kb on + strand, within AZOBR_RS05895 at 1251.014 kb on - strand, within AZOBR_RS05895 at 1251.014 kb on - strand, within AZOBR_RS05895 at 1251.014 kb on - strand, within AZOBR_RS05895 at 1251.014 kb on - strand, within AZOBR_RS05895 at 1251.058 kb on + strand, within AZOBR_RS05895 at 1251.058 kb on + strand, within AZOBR_RS05895 at 1251.059 kb on - strand, within AZOBR_RS05895 at 1251.086 kb on - strand, within AZOBR_RS05895 at 1251.424 kb on + strand at 1251.424 kb on + strand at 1251.424 kb on + strand at 1251.424 kb on + strand at 1251.424 kb on + strand at 1251.425 kb on - strand at 1251.425 kb on - strand at 1251.425 kb on - strand at 1251.535 kb on + strand, within AZOBR_RS05900 at 1251.535 kb on + strand, within AZOBR_RS05900 at 1251.536 kb on - strand, within AZOBR_RS05900 at 1251.536 kb on - strand, within AZOBR_RS05900 at 1251.780 kb on + strand at 1251.780 kb on + strand at 1251.780 kb on + strand at 1251.781 kb on - strand at 1251.781 kb on - strand at 1251.781 kb on - strand at 1251.781 kb on - strand at 1251.781 kb on - strand at 1251.781 kb on - strand at 1251.781 kb on - strand at 1252.050 kb on + strand, within AZOBR_RS05905 at 1252.051 kb on - strand, within AZOBR_RS05905
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,250,413 + +0.2 1,250,413 + +0.5 1,250,414 - +1.5 1,250,414 - -1.2 1,250,414 - -0.6 1,250,498 + AZOBR_RS05890 0.25 -0.5 1,250,663 + AZOBR_RS05890 0.66 +0.9 1,250,663 + AZOBR_RS05890 0.66 +1.3 1,250,663 + AZOBR_RS05890 0.66 +1.1 1,250,663 + AZOBR_RS05890 0.66 -0.6 1,250,663 + AZOBR_RS05890 0.66 -3.0 1,250,663 + AZOBR_RS05890 0.66 -0.1 1,250,663 + AZOBR_RS05890 0.66 -1.0 1,250,664 - AZOBR_RS05890 0.66 -1.8 1,250,845 + +2.2 1,250,846 - +0.4 1,250,846 - -0.1 1,250,884 + AZOBR_RS05895 0.12 +0.1 1,250,885 - AZOBR_RS05895 0.13 +1.2 1,250,944 + AZOBR_RS05895 0.28 +0.3 1,251,013 + AZOBR_RS05895 0.47 +1.9 1,251,013 + AZOBR_RS05895 0.47 -1.9 1,251,014 - AZOBR_RS05895 0.47 -1.4 1,251,014 - AZOBR_RS05895 0.47 +1.8 1,251,014 - AZOBR_RS05895 0.47 -1.0 1,251,014 - AZOBR_RS05895 0.47 -1.8 1,251,058 + AZOBR_RS05895 0.59 +0.1 1,251,058 + AZOBR_RS05895 0.59 -0.4 1,251,059 - AZOBR_RS05895 0.59 +0.4 1,251,086 - AZOBR_RS05895 0.67 -0.0 1,251,424 + -0.9 1,251,424 + -1.8 1,251,424 + -0.2 1,251,424 + +1.1 1,251,424 + -1.6 1,251,425 - -0.3 1,251,425 - +1.0 1,251,425 - +2.0 1,251,535 + AZOBR_RS05900 0.12 +0.7 1,251,535 + AZOBR_RS05900 0.12 -0.6 1,251,536 - AZOBR_RS05900 0.13 +1.2 1,251,536 - AZOBR_RS05900 0.13 -0.1 1,251,780 + +1.1 1,251,780 + -0.8 1,251,780 + -0.6 1,251,781 - +0.3 1,251,781 - -0.1 1,251,781 - +0.5 1,251,781 - -0.2 1,251,781 - +1.0 1,251,781 - -2.0 1,251,781 - +0.1 1,252,050 + AZOBR_RS05905 0.35 +0.6 1,252,051 - AZOBR_RS05905 0.35 +0.4
Or see this region's nucleotide sequence