Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01575

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01565 and AZOBR_RS01570 are separated by 82 nucleotidesAZOBR_RS01570 and AZOBR_RS01575 are separated by 164 nucleotidesAZOBR_RS01575 and AZOBR_RS01580 are separated by 19 nucleotidesAZOBR_RS01580 and AZOBR_RS01585 are separated by 71 nucleotides AZOBR_RS01565: AZOBR_RS01565 - endonuclease III, at 321,932 to 322,579 _RS01565 AZOBR_RS01570: AZOBR_RS01570 - hypothetical protein, at 322,662 to 323,180 _RS01570 AZOBR_RS01575: AZOBR_RS01575 - 6-O-methylguanine DNA methyltransferase, at 323,345 to 324,169 _RS01575 AZOBR_RS01580: AZOBR_RS01580 - dihydrodipicolinate reductase, at 324,189 to 324,986 _RS01580 AZOBR_RS01585: AZOBR_RS01585 - zinc transporter, at 325,058 to 326,044 _RS01585 Position (kb) 323 324 325Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 322.357 kb on - strand, within AZOBR_RS01565at 322.491 kb on + strand, within AZOBR_RS01565at 322.503 kb on + strand, within AZOBR_RS01565at 322.503 kb on + strand, within AZOBR_RS01565at 322.503 kb on + strand, within AZOBR_RS01565at 322.504 kb on - strand, within AZOBR_RS01565at 322.504 kb on - strand, within AZOBR_RS01565at 322.905 kb on + strand, within AZOBR_RS01570at 322.906 kb on - strand, within AZOBR_RS01570at 323.609 kb on + strand, within AZOBR_RS01575at 323.610 kb on - strand, within AZOBR_RS01575at 323.610 kb on - strand, within AZOBR_RS01575at 323.610 kb on - strand, within AZOBR_RS01575at 324.086 kb on + strand, within AZOBR_RS01575at 324.086 kb on + strand, within AZOBR_RS01575at 324.167 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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322,357 - AZOBR_RS01565 0.66 -0.5
322,491 + AZOBR_RS01565 0.86 -1.1
322,503 + AZOBR_RS01565 0.88 -4.8
322,503 + AZOBR_RS01565 0.88 -1.9
322,503 + AZOBR_RS01565 0.88 +0.8
322,504 - AZOBR_RS01565 0.88 +3.3
322,504 - AZOBR_RS01565 0.88 -0.3
322,905 + AZOBR_RS01570 0.47 -1.8
322,906 - AZOBR_RS01570 0.47 -0.2
323,609 + AZOBR_RS01575 0.32 -0.9
323,610 - AZOBR_RS01575 0.32 +1.2
323,610 - AZOBR_RS01575 0.32 -1.1
323,610 - AZOBR_RS01575 0.32 +0.2
324,086 + AZOBR_RS01575 0.90 -1.7
324,086 + AZOBR_RS01575 0.90 -0.0
324,167 + +1.4

Or see this region's nucleotide sequence