Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21925

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21915 and ABZR87_RS21920 overlap by 4 nucleotidesABZR87_RS21920 and ABZR87_RS21925 are separated by 89 nucleotidesABZR87_RS21925 and ABZR87_RS21930 are separated by 127 nucleotidesABZR87_RS21930 and ABZR87_RS21935 are separated by 420 nucleotides ABZR87_RS21915: ABZR87_RS21915 - AI-2E family transporter, at 1,294,352 to 1,295,389 _RS21915 ABZR87_RS21920: ABZR87_RS21920 - DUF1345 domain-containing protein, at 1,295,386 to 1,296,057 _RS21920 ABZR87_RS21925: ABZR87_RS21925 - hypothetical protein, at 1,296,147 to 1,296,449 _RS21925 ABZR87_RS21930: ABZR87_RS21930 - hypothetical protein, at 1,296,577 to 1,297,002 _RS21930 ABZR87_RS21935: ABZR87_RS21935 - DUF6726 family protein, at 1,297,423 to 1,297,590 _RS21935 Position (kb) 1296 1297Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1295.247 kb on + strand, within ABZR87_RS21915at 1295.247 kb on + strand, within ABZR87_RS21915at 1295.247 kb on + strand, within ABZR87_RS21915at 1295.247 kb on + strand, within ABZR87_RS21915at 1295.248 kb on - strand, within ABZR87_RS21915at 1295.248 kb on - strand, within ABZR87_RS21915at 1295.248 kb on - strand, within ABZR87_RS21915at 1295.325 kb on + strandat 1295.325 kb on + strandat 1295.325 kb on + strandat 1295.325 kb on + strandat 1295.325 kb on + strandat 1295.325 kb on + strandat 1295.325 kb on + strandat 1295.326 kb on - strandat 1295.326 kb on - strandat 1295.326 kb on - strandat 1295.326 kb on - strandat 1295.326 kb on - strandat 1295.326 kb on - strandat 1295.326 kb on - strandat 1295.436 kb on + strandat 1295.437 kb on - strandat 1295.437 kb on - strandat 1295.562 kb on - strand, within ABZR87_RS21920at 1295.621 kb on + strand, within ABZR87_RS21920at 1295.621 kb on + strand, within ABZR87_RS21920at 1295.622 kb on - strand, within ABZR87_RS21920at 1295.622 kb on - strand, within ABZR87_RS21920at 1295.622 kb on - strand, within ABZR87_RS21920at 1295.622 kb on - strand, within ABZR87_RS21920at 1295.622 kb on - strand, within ABZR87_RS21920at 1295.634 kb on - strand, within ABZR87_RS21920at 1295.634 kb on - strand, within ABZR87_RS21920at 1295.699 kb on + strand, within ABZR87_RS21920at 1295.699 kb on + strand, within ABZR87_RS21920at 1295.699 kb on + strand, within ABZR87_RS21920at 1295.699 kb on + strand, within ABZR87_RS21920at 1295.699 kb on + strand, within ABZR87_RS21920at 1295.699 kb on + strand, within ABZR87_RS21920at 1295.700 kb on - strand, within ABZR87_RS21920at 1295.889 kb on - strand, within ABZR87_RS21920at 1295.947 kb on + strand, within ABZR87_RS21920at 1295.947 kb on + strand, within ABZR87_RS21920at 1295.948 kb on - strand, within ABZR87_RS21920at 1296.128 kb on + strandat 1296.245 kb on - strand, within ABZR87_RS21925at 1296.318 kb on + strand, within ABZR87_RS21925at 1296.319 kb on - strand, within ABZR87_RS21925at 1296.531 kb on + strandat 1296.600 kb on - strandat 1296.600 kb on - strandat 1296.600 kb on - strandat 1296.639 kb on - strand, within ABZR87_RS21930at 1296.639 kb on - strand, within ABZR87_RS21930at 1296.639 kb on - strand, within ABZR87_RS21930at 1296.639 kb on - strand, within ABZR87_RS21930at 1296.639 kb on - strand, within ABZR87_RS21930at 1296.681 kb on - strand, within ABZR87_RS21930at 1296.718 kb on - strand, within ABZR87_RS21930at 1296.719 kb on + strand, within ABZR87_RS21930at 1296.719 kb on + strand, within ABZR87_RS21930at 1296.719 kb on + strand, within ABZR87_RS21930at 1296.719 kb on + strand, within ABZR87_RS21930at 1296.720 kb on - strand, within ABZR87_RS21930at 1296.720 kb on - strand, within ABZR87_RS21930at 1296.720 kb on - strand, within ABZR87_RS21930at 1296.720 kb on - strand, within ABZR87_RS21930at 1296.720 kb on - strand, within ABZR87_RS21930at 1296.720 kb on - strand, within ABZR87_RS21930at 1296.723 kb on + strand, within ABZR87_RS21930at 1296.723 kb on + strand, within ABZR87_RS21930at 1296.724 kb on - strand, within ABZR87_RS21930at 1296.724 kb on - strand, within ABZR87_RS21930at 1296.724 kb on - strand, within ABZR87_RS21930at 1296.762 kb on - strand, within ABZR87_RS21930at 1296.800 kb on + strand, within ABZR87_RS21930at 1296.800 kb on + strand, within ABZR87_RS21930at 1296.800 kb on + strand, within ABZR87_RS21930at 1296.800 kb on + strand, within ABZR87_RS21930at 1296.800 kb on + strand, within ABZR87_RS21930at 1296.801 kb on - strand, within ABZR87_RS21930at 1296.801 kb on - strand, within ABZR87_RS21930at 1296.839 kb on + strand, within ABZR87_RS21930at 1296.839 kb on + strand, within ABZR87_RS21930at 1296.840 kb on - strand, within ABZR87_RS21930at 1296.840 kb on - strand, within ABZR87_RS21930at 1296.878 kb on + strand, within ABZR87_RS21930at 1296.878 kb on + strand, within ABZR87_RS21930at 1296.920 kb on + strand, within ABZR87_RS21930at 1296.920 kb on + strand, within ABZR87_RS21930at 1296.921 kb on - strand, within ABZR87_RS21930

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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1,295,247 + ABZR87_RS21915 0.86 -0.0
1,295,247 + ABZR87_RS21915 0.86 +2.2
1,295,247 + ABZR87_RS21915 0.86 +2.3
1,295,247 + ABZR87_RS21915 0.86 +1.3
1,295,248 - ABZR87_RS21915 0.86 +1.6
1,295,248 - ABZR87_RS21915 0.86 +1.0
1,295,248 - ABZR87_RS21915 0.86 -0.2
1,295,325 + +1.5
1,295,325 + +1.6
1,295,325 + -1.1
1,295,325 + +2.2
1,295,325 + -3.2
1,295,325 + -1.1
1,295,325 + -0.5
1,295,326 - -0.9
1,295,326 - +1.7
1,295,326 - -0.9
1,295,326 - +0.7
1,295,326 - +0.2
1,295,326 - +1.0
1,295,326 - -1.7
1,295,436 + +0.3
1,295,437 - +1.5
1,295,437 - -1.6
1,295,562 - ABZR87_RS21920 0.26 +3.6
1,295,621 + ABZR87_RS21920 0.35 +1.4
1,295,621 + ABZR87_RS21920 0.35 +2.5
1,295,622 - ABZR87_RS21920 0.35 +4.0
1,295,622 - ABZR87_RS21920 0.35 -2.6
1,295,622 - ABZR87_RS21920 0.35 +0.5
1,295,622 - ABZR87_RS21920 0.35 +0.7
1,295,622 - ABZR87_RS21920 0.35 -0.5
1,295,634 - ABZR87_RS21920 0.37 +0.6
1,295,634 - ABZR87_RS21920 0.37 +0.4
1,295,699 + ABZR87_RS21920 0.47 -0.9
1,295,699 + ABZR87_RS21920 0.47 -2.4
1,295,699 + ABZR87_RS21920 0.47 +0.5
1,295,699 + ABZR87_RS21920 0.47 +0.8
1,295,699 + ABZR87_RS21920 0.47 +0.6
1,295,699 + ABZR87_RS21920 0.47 +0.9
1,295,700 - ABZR87_RS21920 0.47 -2.4
1,295,889 - ABZR87_RS21920 0.75 -1.2
1,295,947 + ABZR87_RS21920 0.83 +1.6
1,295,947 + ABZR87_RS21920 0.83 -0.5
1,295,948 - ABZR87_RS21920 0.84 +0.1
1,296,128 + +2.1
1,296,245 - ABZR87_RS21925 0.32 +1.2
1,296,318 + ABZR87_RS21925 0.56 -0.1
1,296,319 - ABZR87_RS21925 0.57 +1.6
1,296,531 + +0.4
1,296,600 - +1.7
1,296,600 - +1.9
1,296,600 - -0.5
1,296,639 - ABZR87_RS21930 0.15 -3.5
1,296,639 - ABZR87_RS21930 0.15 -1.1
1,296,639 - ABZR87_RS21930 0.15 -0.0
1,296,639 - ABZR87_RS21930 0.15 +1.4
1,296,639 - ABZR87_RS21930 0.15 +1.2
1,296,681 - ABZR87_RS21930 0.24 +0.3
1,296,718 - ABZR87_RS21930 0.33 -0.3
1,296,719 + ABZR87_RS21930 0.33 -2.1
1,296,719 + ABZR87_RS21930 0.33 -3.2
1,296,719 + ABZR87_RS21930 0.33 -3.3
1,296,719 + ABZR87_RS21930 0.33 +0.5
1,296,720 - ABZR87_RS21930 0.34 -0.8
1,296,720 - ABZR87_RS21930 0.34 -2.0
1,296,720 - ABZR87_RS21930 0.34 +0.0
1,296,720 - ABZR87_RS21930 0.34 -1.1
1,296,720 - ABZR87_RS21930 0.34 -2.4
1,296,720 - ABZR87_RS21930 0.34 -1.6
1,296,723 + ABZR87_RS21930 0.34 -0.9
1,296,723 + ABZR87_RS21930 0.34 -0.1
1,296,724 - ABZR87_RS21930 0.35 -0.6
1,296,724 - ABZR87_RS21930 0.35 +1.9
1,296,724 - ABZR87_RS21930 0.35 +0.6
1,296,762 - ABZR87_RS21930 0.43 -0.7
1,296,800 + ABZR87_RS21930 0.52 -0.2
1,296,800 + ABZR87_RS21930 0.52 -2.0
1,296,800 + ABZR87_RS21930 0.52 -1.2
1,296,800 + ABZR87_RS21930 0.52 +2.1
1,296,800 + ABZR87_RS21930 0.52 -0.1
1,296,801 - ABZR87_RS21930 0.53 -1.1
1,296,801 - ABZR87_RS21930 0.53 -2.0
1,296,839 + ABZR87_RS21930 0.62 -1.1
1,296,839 + ABZR87_RS21930 0.62 +0.9
1,296,840 - ABZR87_RS21930 0.62 -0.7
1,296,840 - ABZR87_RS21930 0.62 +0.1
1,296,878 + ABZR87_RS21930 0.71 -3.2
1,296,878 + ABZR87_RS21930 0.71 -1.2
1,296,920 + ABZR87_RS21930 0.81 -2.9
1,296,920 + ABZR87_RS21930 0.81 -2.0
1,296,921 - ABZR87_RS21930 0.81 -1.1

Or see this region's nucleotide sequence