Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21245

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21240 and ABZR87_RS21245 are separated by 20 nucleotidesABZR87_RS21245 and ABZR87_RS21250 overlap by 7 nucleotidesABZR87_RS21250 and ABZR87_RS21255 are separated by 9 nucleotides ABZR87_RS21240: ABZR87_RS21240 - 1,2-phenylacetyl-CoA epoxidase subunit PaaE, at 1,147,094 to 1,148,194 _RS21240 ABZR87_RS21245: ABZR87_RS21245 - 1,2-phenylacetyl-CoA epoxidase subunit PaaD, at 1,148,215 to 1,148,727 _RS21245 ABZR87_RS21250: ABZR87_RS21250 - 1,2-phenylacetyl-CoA epoxidase subunit PaaC, at 1,148,721 to 1,149,521 _RS21250 ABZR87_RS21255: ABZR87_RS21255 - 1,2-phenylacetyl-CoA epoxidase subunit PaaB, at 1,149,531 to 1,149,818 _RS21255 Position (kb) 1148 1149Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1147.267 kb on - strand, within ABZR87_RS21240at 1147.645 kb on - strand, within ABZR87_RS21240at 1147.729 kb on - strand, within ABZR87_RS21240at 1147.825 kb on - strand, within ABZR87_RS21240at 1147.825 kb on - strand, within ABZR87_RS21240at 1147.857 kb on + strand, within ABZR87_RS21240at 1147.857 kb on + strand, within ABZR87_RS21240at 1147.858 kb on - strand, within ABZR87_RS21240at 1147.984 kb on - strand, within ABZR87_RS21240at 1148.010 kb on + strand, within ABZR87_RS21240at 1148.010 kb on + strand, within ABZR87_RS21240at 1148.011 kb on - strand, within ABZR87_RS21240at 1148.083 kb on + strand, within ABZR87_RS21240at 1148.083 kb on + strand, within ABZR87_RS21240at 1148.220 kb on - strandat 1148.220 kb on - strandat 1148.220 kb on - strandat 1148.232 kb on - strandat 1148.265 kb on - strandat 1148.265 kb on - strandat 1148.576 kb on + strand, within ABZR87_RS21245at 1148.722 kb on + strandat 1148.723 kb on - strandat 1148.723 kb on - strandat 1148.723 kb on - strandat 1148.821 kb on + strand, within ABZR87_RS21250at 1148.821 kb on + strand, within ABZR87_RS21250at 1148.822 kb on - strand, within ABZR87_RS21250at 1148.975 kb on - strand, within ABZR87_RS21250at 1148.975 kb on - strand, within ABZR87_RS21250at 1149.170 kb on - strand, within ABZR87_RS21250at 1149.170 kb on - strand, within ABZR87_RS21250at 1149.199 kb on + strand, within ABZR87_RS21250at 1149.200 kb on - strand, within ABZR87_RS21250at 1149.262 kb on + strand, within ABZR87_RS21250at 1149.293 kb on - strand, within ABZR87_RS21250at 1149.293 kb on - strand, within ABZR87_RS21250at 1149.298 kb on + strand, within ABZR87_RS21250at 1149.299 kb on - strand, within ABZR87_RS21250at 1149.496 kb on + strandat 1149.496 kb on + strandat 1149.496 kb on + strandat 1149.496 kb on + strandat 1149.496 kb on + strandat 1149.497 kb on - strandat 1149.497 kb on - strandat 1149.497 kb on - strandat 1149.497 kb on - strandat 1149.497 kb on - strandat 1149.562 kb on + strand, within ABZR87_RS21255at 1149.562 kb on + strand, within ABZR87_RS21255at 1149.562 kb on + strand, within ABZR87_RS21255at 1149.692 kb on - strand, within ABZR87_RS21255

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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1,147,267 - ABZR87_RS21240 0.16 -0.2
1,147,645 - ABZR87_RS21240 0.50 +0.3
1,147,729 - ABZR87_RS21240 0.58 -1.7
1,147,825 - ABZR87_RS21240 0.66 +0.8
1,147,825 - ABZR87_RS21240 0.66 -0.8
1,147,857 + ABZR87_RS21240 0.69 +0.3
1,147,857 + ABZR87_RS21240 0.69 -1.0
1,147,858 - ABZR87_RS21240 0.69 +2.0
1,147,984 - ABZR87_RS21240 0.81 +1.7
1,148,010 + ABZR87_RS21240 0.83 -2.9
1,148,010 + ABZR87_RS21240 0.83 +0.8
1,148,011 - ABZR87_RS21240 0.83 +1.8
1,148,083 + ABZR87_RS21240 0.90 -3.2
1,148,083 + ABZR87_RS21240 0.90 -0.2
1,148,220 - +1.1
1,148,220 - +1.2
1,148,220 - +2.5
1,148,232 - -0.2
1,148,265 - +0.2
1,148,265 - -1.1
1,148,576 + ABZR87_RS21245 0.70 +1.6
1,148,722 + -0.4
1,148,723 - -0.1
1,148,723 - -0.0
1,148,723 - +0.7
1,148,821 + ABZR87_RS21250 0.12 -0.9
1,148,821 + ABZR87_RS21250 0.12 +0.7
1,148,822 - ABZR87_RS21250 0.13 +0.7
1,148,975 - ABZR87_RS21250 0.32 -0.5
1,148,975 - ABZR87_RS21250 0.32 +0.5
1,149,170 - ABZR87_RS21250 0.56 +1.5
1,149,170 - ABZR87_RS21250 0.56 +1.1
1,149,199 + ABZR87_RS21250 0.60 +1.3
1,149,200 - ABZR87_RS21250 0.60 +2.8
1,149,262 + ABZR87_RS21250 0.68 -0.3
1,149,293 - ABZR87_RS21250 0.71 +2.1
1,149,293 - ABZR87_RS21250 0.71 -0.2
1,149,298 + ABZR87_RS21250 0.72 -1.2
1,149,299 - ABZR87_RS21250 0.72 +0.5
1,149,496 + +0.5
1,149,496 + -1.1
1,149,496 + +0.0
1,149,496 + -0.5
1,149,496 + -0.7
1,149,497 - -1.8
1,149,497 - +1.4
1,149,497 - -2.6
1,149,497 - +2.7
1,149,497 - -0.1
1,149,562 + ABZR87_RS21255 0.11 +0.4
1,149,562 + ABZR87_RS21255 0.11 +2.4
1,149,562 + ABZR87_RS21255 0.11 +0.6
1,149,692 - ABZR87_RS21255 0.56 +0.1

Or see this region's nucleotide sequence